Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1957

Experiment: MoLS4 with Chlorate 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1956 and DvMF_1957 are separated by 611 nucleotidesDvMF_1957 and potC overlap by 1 nucleotidespotC and DvMF_1959 are separated by 1 nucleotides DvMF_1956: DvMF_1956 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 2,416,439 to 2,418,166 _1956 DvMF_1957: DvMF_1957 - extracellular solute-binding protein family 1 (RefSeq), at 2,418,778 to 2,419,854 _1957 DvMF_1958: potC - spermidine/putrescine ABC transporter membrane protein (RefSeq), at 2,419,854 to 2,420,654 potC DvMF_1959: DvMF_1959 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,420,656 to 2,421,624 _1959 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -1 0 1at 2417.806 kb on - strand, within DvMF_1956at 2417.859 kb on + strand, within DvMF_1956at 2418.091 kb on + strandat 2418.175 kb on + strandat 2418.347 kb on + strandat 2418.678 kb on + strandat 2418.924 kb on - strand, within DvMF_1957at 2418.924 kb on - strand, within DvMF_1957at 2418.947 kb on - strand, within DvMF_1957at 2418.949 kb on + strand, within DvMF_1957at 2419.048 kb on - strand, within DvMF_1957at 2419.128 kb on - strand, within DvMF_1957at 2419.435 kb on + strand, within DvMF_1957at 2419.476 kb on + strand, within DvMF_1957at 2419.604 kb on + strand, within DvMF_1957at 2419.612 kb on - strand, within DvMF_1957at 2419.621 kb on - strand, within DvMF_1957at 2419.654 kb on + strand, within DvMF_1957at 2419.663 kb on - strand, within DvMF_1957at 2419.898 kb on + strandat 2419.906 kb on - strandat 2420.043 kb on - strand, within potCat 2420.144 kb on - strand, within potCat 2420.205 kb on + strand, within potCat 2420.210 kb on + strand, within potCat 2420.402 kb on - strand, within potCat 2420.454 kb on + strand, within potCat 2420.555 kb on + strand, within potCat 2420.589 kb on - strandat 2420.589 kb on - strandat 2420.595 kb on + strandat 2420.603 kb on - strandat 2420.656 kb on - strandat 2420.668 kb on - strandat 2420.787 kb on + strand, within DvMF_1959at 2420.850 kb on - strand, within DvMF_1959

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 3.125 mM
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2,417,806 - DvMF_1956 0.79 +1.1
2,417,859 + DvMF_1956 0.82 +0.3
2,418,091 + +1.0
2,418,175 + +0.7
2,418,347 + +1.6
2,418,678 + +0.1
2,418,924 - DvMF_1957 0.14 -0.0
2,418,924 - DvMF_1957 0.14 -0.2
2,418,947 - DvMF_1957 0.16 +0.0
2,418,949 + DvMF_1957 0.16 +0.0
2,419,048 - DvMF_1957 0.25 -0.0
2,419,128 - DvMF_1957 0.32 -0.5
2,419,435 + DvMF_1957 0.61 -0.3
2,419,476 + DvMF_1957 0.65 -0.4
2,419,604 + DvMF_1957 0.77 +0.6
2,419,612 - DvMF_1957 0.77 +0.4
2,419,621 - DvMF_1957 0.78 -0.2
2,419,654 + DvMF_1957 0.81 +0.2
2,419,663 - DvMF_1957 0.82 -0.1
2,419,898 + -0.3
2,419,906 - -0.1
2,420,043 - potC DvMF_1958 0.24 -0.5
2,420,144 - potC DvMF_1958 0.36 -1.3
2,420,205 + potC DvMF_1958 0.44 -0.2
2,420,210 + potC DvMF_1958 0.44 -0.3
2,420,402 - potC DvMF_1958 0.68 -0.4
2,420,454 + potC DvMF_1958 0.75 -0.4
2,420,555 + potC DvMF_1958 0.88 -0.1
2,420,589 - +0.1
2,420,589 - -0.3
2,420,595 + +0.1
2,420,603 - +0.2
2,420,656 - -0.4
2,420,668 - -0.5
2,420,787 + DvMF_1959 0.14 +0.1
2,420,850 - DvMF_1959 0.20 -0.2

Or see this region's nucleotide sequence