Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0323

Experiment: MoLS4 with Chlorate 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0321 and DvMF_0322 are separated by 279 nucleotidesDvMF_0322 and DvMF_0323 overlap by 4 nucleotidesDvMF_0323 and DvMF_0324 overlap by 4 nucleotides DvMF_0321: DvMF_0321 - iron-containing alcohol dehydrogenase (RefSeq), at 374,055 to 375,236 _0321 DvMF_0322: DvMF_0322 - heterodisulfide reductase, C subunit (RefSeq), at 375,516 to 376,076 _0322 DvMF_0323: DvMF_0323 - CoB--CoM heterodisulfide reductase (RefSeq), at 376,073 to 377,053 _0323 DvMF_0324: DvMF_0324 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 377,050 to 379,008 _0324 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1at 375.580 kb on + strand, within DvMF_0322at 375.713 kb on - strand, within DvMF_0322at 376.676 kb on - strand, within DvMF_0323at 376.828 kb on - strand, within DvMF_0323at 376.981 kb on + strandat 377.019 kb on - strandat 377.118 kb on + strandat 377.216 kb on + strandat 377.502 kb on + strand, within DvMF_0324at 377.502 kb on + strand, within DvMF_0324at 377.520 kb on - strand, within DvMF_0324at 378.049 kb on - strand, within DvMF_0324at 378.049 kb on - strand, within DvMF_0324

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 3.125 mM
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375,580 + DvMF_0322 0.11 -1.7
375,713 - DvMF_0322 0.35 -0.6
376,676 - DvMF_0323 0.61 -2.2
376,828 - DvMF_0323 0.77 -2.2
376,981 + -0.6
377,019 - -1.7
377,118 + -1.7
377,216 + -2.0
377,502 + DvMF_0324 0.23 -1.9
377,502 + DvMF_0324 0.23 -1.4
377,520 - DvMF_0324 0.24 -1.6
378,049 - DvMF_0324 0.51 -0.6
378,049 - DvMF_0324 0.51 -1.5

Or see this region's nucleotide sequence