Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.922.1 and Xcc-8004.923.1 overlap by 4 nucleotides Xcc-8004.923.1 and Xcc-8004.924.1 are separated by 125 nucleotides Xcc-8004.924.1 and Xcc-8004.925.1 are separated by 83 nucleotides
Xcc-8004.922.1: Xcc-8004.922.1 - FIG01210252: hypothetical protein, at 865,912 to 866,976
Xcc-8004.922.1
Xcc-8004.923.1: Xcc-8004.923.1 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 866,973 to 867,836
Xcc-8004.923.1
Xcc-8004.924.1: Xcc-8004.924.1 - FIG01200701: possible membrane protein, at 867,962 to 868,339
Xcc-8004.924.1
Xcc-8004.925.1: Xcc-8004.925.1 - FIG01210026: hypothetical protein, at 868,423 to 869,817
Xcc-8004.925.1
Position (kb) 867
868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 867.046 kb on + strand at 867.046 kb on + strand at 867.047 kb on - strand at 867.047 kb on - strand at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.175 kb on - strand, within Xcc-8004.923.1 at 867.247 kb on - strand, within Xcc-8004.923.1 at 867.247 kb on - strand, within Xcc-8004.923.1 at 867.402 kb on + strand, within Xcc-8004.923.1 at 867.402 kb on + strand, within Xcc-8004.923.1 at 867.403 kb on - strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.534 kb on + strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.535 kb on - strand, within Xcc-8004.923.1 at 867.564 kb on + strand, within Xcc-8004.923.1 at 867.564 kb on + strand, within Xcc-8004.923.1 at 867.891 kb on + strand at 867.891 kb on + strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.892 kb on - strand at 867.905 kb on + strand at 867.905 kb on + strand at 867.906 kb on - strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.958 kb on + strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.959 kb on - strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.988 kb on + strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 867.989 kb on - strand at 868.040 kb on + strand, within Xcc-8004.924.1 at 868.055 kb on + strand, within Xcc-8004.924.1 at 868.411 kb on + strand at 868.411 kb on + strand at 868.411 kb on + strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.412 kb on - strand at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.689 kb on + strand, within Xcc-8004.925.1 at 868.819 kb on + strand, within Xcc-8004.925.1 at 868.978 kb on + strand, within Xcc-8004.925.1 at 868.979 kb on - strand, within Xcc-8004.925.1 at 869.020 kb on + strand, within Xcc-8004.925.1 at 869.021 kb on - strand, within Xcc-8004.925.1 at 869.021 kb on - strand, within Xcc-8004.925.1 at 869.093 kb on - strand, within Xcc-8004.925.1 at 869.093 kb on - strand, within Xcc-8004.925.1 at 869.112 kb on + strand, within Xcc-8004.925.1 at 869.299 kb on + strand, within Xcc-8004.925.1 at 869.299 kb on + strand, within Xcc-8004.925.1 at 869.300 kb on - strand, within Xcc-8004.925.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 867,046 + -1.4 867,046 + -0.1 867,047 - -0.5 867,047 - -0.1 867,175 - Xcc-8004.923.1 0.23 -0.7 867,175 - Xcc-8004.923.1 0.23 -0.9 867,175 - Xcc-8004.923.1 0.23 -0.2 867,175 - Xcc-8004.923.1 0.23 -0.8 867,175 - Xcc-8004.923.1 0.23 -0.1 867,175 - Xcc-8004.923.1 0.23 -0.0 867,175 - Xcc-8004.923.1 0.23 -0.6 867,247 - Xcc-8004.923.1 0.32 -0.3 867,247 - Xcc-8004.923.1 0.32 -0.2 867,402 + Xcc-8004.923.1 0.50 +1.1 867,402 + Xcc-8004.923.1 0.50 -1.0 867,403 - Xcc-8004.923.1 0.50 +1.3 867,534 + Xcc-8004.923.1 0.65 +0.6 867,534 + Xcc-8004.923.1 0.65 -1.2 867,534 + Xcc-8004.923.1 0.65 -0.8 867,535 - Xcc-8004.923.1 0.65 -0.5 867,535 - Xcc-8004.923.1 0.65 +0.4 867,535 - Xcc-8004.923.1 0.65 +0.3 867,535 - Xcc-8004.923.1 0.65 +0.1 867,564 + Xcc-8004.923.1 0.68 -1.0 867,564 + Xcc-8004.923.1 0.68 -1.9 867,891 + -2.1 867,891 + -1.8 867,892 - -0.4 867,892 - +0.5 867,892 - -0.4 867,892 - -0.5 867,905 + -0.3 867,905 + -1.6 867,906 - -0.7 867,958 + +0.0 867,958 + -0.9 867,958 + +0.2 867,958 + +0.7 867,958 + -1.2 867,958 + +1.0 867,958 + -0.0 867,958 + +0.5 867,959 - +0.1 867,959 - -0.3 867,959 - +0.8 867,959 - -0.0 867,988 + +0.8 867,988 + -0.2 867,988 + +2.0 867,988 + -0.5 867,988 + +0.6 867,988 + -1.1 867,989 - +0.9 867,989 - +0.3 867,989 - -1.1 867,989 - -0.6 867,989 - +0.5 867,989 - +0.5 867,989 - -0.4 867,989 - -0.4 867,989 - -1.3 867,989 - -0.3 867,989 - -0.6 868,040 + Xcc-8004.924.1 0.21 -0.7 868,055 + Xcc-8004.924.1 0.25 -0.2 868,411 + -0.7 868,411 + +0.4 868,411 + -1.4 868,412 - -1.5 868,412 - -0.2 868,412 - -1.4 868,412 - +0.6 868,689 + Xcc-8004.925.1 0.19 -1.7 868,689 + Xcc-8004.925.1 0.19 -2.8 868,689 + Xcc-8004.925.1 0.19 +1.1 868,689 + Xcc-8004.925.1 0.19 -1.5 868,819 + Xcc-8004.925.1 0.28 -0.3 868,978 + Xcc-8004.925.1 0.40 -0.5 868,979 - Xcc-8004.925.1 0.40 -1.3 869,020 + Xcc-8004.925.1 0.43 -1.4 869,021 - Xcc-8004.925.1 0.43 -0.3 869,021 - Xcc-8004.925.1 0.43 +0.3 869,093 - Xcc-8004.925.1 0.48 +0.0 869,093 - Xcc-8004.925.1 0.48 +0.2 869,112 + Xcc-8004.925.1 0.49 -3.2 869,299 + Xcc-8004.925.1 0.63 -0.9 869,299 + Xcc-8004.925.1 0.63 -0.8 869,300 - Xcc-8004.925.1 0.63 -0.6
Or see this region's nucleotide sequence