Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.827.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.826.1 and Xcc-8004.827.1 are separated by 132 nucleotidesXcc-8004.827.1 and Xcc-8004.828.1 are separated by 3 nucleotides Xcc-8004.826.1: Xcc-8004.826.1 - Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-), at 778,114 to 780,051 Xcc-8004.826.1 Xcc-8004.827.1: Xcc-8004.827.1 - phospholipase/carboxylesterase family protein, at 780,184 to 780,852 Xcc-8004.827.1 Xcc-8004.828.1: Xcc-8004.828.1 - Autolysin sensor kinase (EC 2.7.3.-), at 780,856 to 781,911 Xcc-8004.828.1 Position (kb) 780 781Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 779.212 kb on + strand, within Xcc-8004.826.1at 779.212 kb on + strand, within Xcc-8004.826.1at 779.212 kb on + strand, within Xcc-8004.826.1at 779.213 kb on - strand, within Xcc-8004.826.1at 779.213 kb on - strand, within Xcc-8004.826.1at 779.227 kb on + strand, within Xcc-8004.826.1at 779.227 kb on + strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.371 kb on + strand, within Xcc-8004.826.1at 779.371 kb on + strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.480 kb on - strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.565 kb on + strand, within Xcc-8004.826.1at 779.565 kb on + strand, within Xcc-8004.826.1at 779.566 kb on - strand, within Xcc-8004.826.1at 779.566 kb on - strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.834 kb on - strand, within Xcc-8004.826.1at 779.834 kb on - strand, within Xcc-8004.826.1at 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.391 kb on + strand, within Xcc-8004.827.1at 780.391 kb on + strand, within Xcc-8004.827.1at 780.392 kb on - strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.772 kb on + strand, within Xcc-8004.827.1at 780.772 kb on + strand, within Xcc-8004.827.1at 780.773 kb on - strand, within Xcc-8004.827.1at 780.773 kb on - strand, within Xcc-8004.827.1at 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.988 kb on - strand, within Xcc-8004.828.1at 780.988 kb on - strand, within Xcc-8004.828.1at 781.174 kb on + strand, within Xcc-8004.828.1at 781.175 kb on - strand, within Xcc-8004.828.1at 781.175 kb on - strand, within Xcc-8004.828.1at 781.227 kb on + strand, within Xcc-8004.828.1at 781.280 kb on - strand, within Xcc-8004.828.1at 781.285 kb on + strand, within Xcc-8004.828.1at 781.285 kb on + strand, within Xcc-8004.828.1at 781.285 kb on + strand, within Xcc-8004.828.1at 781.285 kb on + strand, within Xcc-8004.828.1at 781.286 kb on - strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.693 kb on + strand, within Xcc-8004.828.1at 781.694 kb on - strand, within Xcc-8004.828.1at 781.694 kb on - strand, within Xcc-8004.828.1at 781.694 kb on - strand, within Xcc-8004.828.1at 781.734 kb on + strand, within Xcc-8004.828.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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779,212 + Xcc-8004.826.1 0.57 -1.9
779,212 + Xcc-8004.826.1 0.57 -1.7
779,212 + Xcc-8004.826.1 0.57 -1.6
779,213 - Xcc-8004.826.1 0.57 -1.0
779,213 - Xcc-8004.826.1 0.57 -1.9
779,227 + Xcc-8004.826.1 0.57 -0.9
779,227 + Xcc-8004.826.1 0.57 -0.6
779,228 - Xcc-8004.826.1 0.57 -1.8
779,228 - Xcc-8004.826.1 0.57 -2.4
779,228 - Xcc-8004.826.1 0.57 -2.5
779,228 - Xcc-8004.826.1 0.57 -0.7
779,228 - Xcc-8004.826.1 0.57 -2.8
779,371 + Xcc-8004.826.1 0.65 -0.6
779,371 + Xcc-8004.826.1 0.65 -1.6
779,372 - Xcc-8004.826.1 0.65 -0.8
779,372 - Xcc-8004.826.1 0.65 -0.5
779,372 - Xcc-8004.826.1 0.65 -0.7
779,480 - Xcc-8004.826.1 0.70 -1.6
779,563 + Xcc-8004.826.1 0.75 -1.6
779,563 + Xcc-8004.826.1 0.75 -2.1
779,563 + Xcc-8004.826.1 0.75 -0.8
779,564 - Xcc-8004.826.1 0.75 -2.1
779,564 - Xcc-8004.826.1 0.75 +0.5
779,564 - Xcc-8004.826.1 0.75 +0.3
779,564 - Xcc-8004.826.1 0.75 -2.2
779,565 + Xcc-8004.826.1 0.75 -2.4
779,565 + Xcc-8004.826.1 0.75 +0.8
779,566 - Xcc-8004.826.1 0.75 -0.7
779,566 - Xcc-8004.826.1 0.75 -1.3
779,680 + Xcc-8004.826.1 0.81 -1.6
779,680 + Xcc-8004.826.1 0.81 -2.9
779,680 + Xcc-8004.826.1 0.81 -1.8
779,680 + Xcc-8004.826.1 0.81 -1.6
779,680 + Xcc-8004.826.1 0.81 +0.2
779,680 + Xcc-8004.826.1 0.81 -3.4
779,680 + Xcc-8004.826.1 0.81 -1.3
779,680 + Xcc-8004.826.1 0.81 -1.0
779,681 - Xcc-8004.826.1 0.81 -2.4
779,681 - Xcc-8004.826.1 0.81 -1.1
779,681 - Xcc-8004.826.1 0.81 -2.4
779,681 - Xcc-8004.826.1 0.81 -1.7
779,681 - Xcc-8004.826.1 0.81 -0.5
779,681 - Xcc-8004.826.1 0.81 -3.1
779,788 + Xcc-8004.826.1 0.86 -2.7
779,788 + Xcc-8004.826.1 0.86 -0.5
779,788 + Xcc-8004.826.1 0.86 -2.6
779,788 + Xcc-8004.826.1 0.86 -2.4
779,788 + Xcc-8004.826.1 0.86 -1.4
779,788 + Xcc-8004.826.1 0.86 -0.6
779,788 + Xcc-8004.826.1 0.86 -0.9
779,789 - Xcc-8004.826.1 0.86 -2.2
779,789 - Xcc-8004.826.1 0.86 -2.1
779,789 - Xcc-8004.826.1 0.86 -1.2
779,789 - Xcc-8004.826.1 0.86 -2.6
779,789 - Xcc-8004.826.1 0.86 -0.1
779,789 - Xcc-8004.826.1 0.86 -2.7
779,834 - Xcc-8004.826.1 0.89 -0.9
779,834 - Xcc-8004.826.1 0.89 -1.7
780,155 + -0.6
780,155 + +0.7
780,155 + +0.1
780,155 + +0.5
780,155 + -0.3
780,156 - -1.1
780,156 - -0.4
780,156 - -1.0
780,156 - -0.3
780,391 + Xcc-8004.827.1 0.31 -1.6
780,391 + Xcc-8004.827.1 0.31 -0.2
780,392 - Xcc-8004.827.1 0.31 -0.6
780,607 + Xcc-8004.827.1 0.63 +0.3
780,607 + Xcc-8004.827.1 0.63 -3.0
780,607 + Xcc-8004.827.1 0.63 -1.1
780,607 + Xcc-8004.827.1 0.63 -1.3
780,607 + Xcc-8004.827.1 0.63 +3.1
780,607 + Xcc-8004.827.1 0.63 +1.2
780,607 + Xcc-8004.827.1 0.63 +0.8
780,607 + Xcc-8004.827.1 0.63 +1.0
780,607 + Xcc-8004.827.1 0.63 -1.8
780,607 + Xcc-8004.827.1 0.63 +0.2
780,607 + Xcc-8004.827.1 0.63 -0.2
780,607 + Xcc-8004.827.1 0.63 -0.9
780,608 - Xcc-8004.827.1 0.63 -2.8
780,608 - Xcc-8004.827.1 0.63 +0.7
780,608 - Xcc-8004.827.1 0.63 +0.2
780,608 - Xcc-8004.827.1 0.63 +1.6
780,608 - Xcc-8004.827.1 0.63 -0.8
780,608 - Xcc-8004.827.1 0.63 +0.6
780,608 - Xcc-8004.827.1 0.63 -0.3
780,608 - Xcc-8004.827.1 0.63 -0.5
780,608 - Xcc-8004.827.1 0.63 -1.7
780,608 - Xcc-8004.827.1 0.63 -0.6
780,608 - Xcc-8004.827.1 0.63 -1.5
780,768 + Xcc-8004.827.1 0.87 +0.6
780,768 + Xcc-8004.827.1 0.87 -2.2
780,768 + Xcc-8004.827.1 0.87 -1.3
780,768 + Xcc-8004.827.1 0.87 +0.2
780,768 + Xcc-8004.827.1 0.87 -0.5
780,768 + Xcc-8004.827.1 0.87 -0.0
780,768 + Xcc-8004.827.1 0.87 -0.4
780,769 - Xcc-8004.827.1 0.87 -0.2
780,769 - Xcc-8004.827.1 0.87 -0.1
780,769 - Xcc-8004.827.1 0.87 -1.3
780,769 - Xcc-8004.827.1 0.87 +0.1
780,769 - Xcc-8004.827.1 0.87 -1.6
780,769 - Xcc-8004.827.1 0.87 -0.3
780,769 - Xcc-8004.827.1 0.87 +0.3
780,769 - Xcc-8004.827.1 0.87 -0.2
780,769 - Xcc-8004.827.1 0.87 -0.7
780,772 + Xcc-8004.827.1 0.88 -0.2
780,772 + Xcc-8004.827.1 0.88 +0.1
780,773 - Xcc-8004.827.1 0.88 -0.5
780,773 - Xcc-8004.827.1 0.88 -0.8
780,862 + +0.2
780,862 + -0.6
780,862 + -1.3
780,862 + -0.7
780,862 + -1.1
780,862 + -0.4
780,863 - -2.2
780,863 - -0.0
780,863 - -1.0
780,863 - -0.8
780,863 - -0.3
780,988 - Xcc-8004.828.1 0.12 +0.1
780,988 - Xcc-8004.828.1 0.12 +0.1
781,174 + Xcc-8004.828.1 0.30 -0.2
781,175 - Xcc-8004.828.1 0.30 -1.1
781,175 - Xcc-8004.828.1 0.30 -1.7
781,227 + Xcc-8004.828.1 0.35 -0.8
781,280 - Xcc-8004.828.1 0.40 +0.5
781,285 + Xcc-8004.828.1 0.41 +0.6
781,285 + Xcc-8004.828.1 0.41 +0.3
781,285 + Xcc-8004.828.1 0.41 +0.2
781,285 + Xcc-8004.828.1 0.41 +0.1
781,286 - Xcc-8004.828.1 0.41 +1.7
781,693 + Xcc-8004.828.1 0.79 +1.4
781,693 + Xcc-8004.828.1 0.79 -0.3
781,693 + Xcc-8004.828.1 0.79 -0.0
781,693 + Xcc-8004.828.1 0.79 +0.4
781,693 + Xcc-8004.828.1 0.79 +0.2
781,693 + Xcc-8004.828.1 0.79 +0.3
781,693 + Xcc-8004.828.1 0.79 -0.5
781,694 - Xcc-8004.828.1 0.79 +0.7
781,694 - Xcc-8004.828.1 0.79 +0.4
781,694 - Xcc-8004.828.1 0.79 -0.0
781,734 + Xcc-8004.828.1 0.83 +0.6

Or see this region's nucleotide sequence