Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.767.1 and Xcc-8004.768.1 are separated by 153 nucleotides Xcc-8004.768.1 and Xcc-8004.769.1 are separated by 93 nucleotides Xcc-8004.769.1 and Xcc-8004.770.1 are separated by 6 nucleotides Xcc-8004.770.1 and Xcc-8004.771.1 are separated by 27 nucleotides
Xcc-8004.767.1: Xcc-8004.767.1 - FIG01210758: hypothetical protein, at 713,188 to 714,579
Xcc-8004.767.1
Xcc-8004.768.1: Xcc-8004.768.1 - Glutathione S-transferase, omega (EC 2.5.1.18), at 714,733 to 715,704
Xcc-8004.768.1
Xcc-8004.769.1: Xcc-8004.769.1 - Lactoylglutathione lyase and related lyases, at 715,798 to 716,190
Xcc-8004.769.1
Xcc-8004.770.1: Xcc-8004.770.1 - hypothetical protein, at 716,197 to 716,328
Xcc-8004.770.1
Xcc-8004.771.1: Xcc-8004.771.1 - FIG01209961: hypothetical protein, at 716,356 to 716,817
Xcc-8004.771.1
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.858 kb on + strand, within Xcc-8004.767.1 at 713.859 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1 at 713.912 kb on - strand, within Xcc-8004.767.1 at 714.135 kb on + strand, within Xcc-8004.767.1 at 714.232 kb on + strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.236 kb on - strand, within Xcc-8004.767.1 at 714.299 kb on + strand, within Xcc-8004.767.1 at 714.515 kb on - strand at 714.565 kb on - strand at 714.565 kb on - strand at 714.566 kb on + strand at 714.567 kb on - strand at 714.567 kb on - strand at 714.704 kb on + strand at 714.705 kb on - strand at 714.705 kb on - strand at 714.716 kb on + strand at 714.716 kb on + strand at 714.772 kb on + strand at 714.772 kb on + strand at 714.895 kb on + strand, within Xcc-8004.768.1 at 714.896 kb on - strand, within Xcc-8004.768.1 at 714.904 kb on + strand, within Xcc-8004.768.1 at 714.904 kb on + strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 714.905 kb on - strand, within Xcc-8004.768.1 at 715.072 kb on + strand, within Xcc-8004.768.1 at 715.072 kb on + strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.079 kb on - strand, within Xcc-8004.768.1 at 715.087 kb on + strand, within Xcc-8004.768.1 at 715.087 kb on + strand, within Xcc-8004.768.1 at 715.088 kb on - strand, within Xcc-8004.768.1 at 715.156 kb on - strand, within Xcc-8004.768.1 at 715.269 kb on + strand, within Xcc-8004.768.1 at 715.270 kb on - strand, within Xcc-8004.768.1 at 715.313 kb on - strand, within Xcc-8004.768.1 at 715.345 kb on + strand, within Xcc-8004.768.1 at 715.346 kb on - strand, within Xcc-8004.768.1 at 715.414 kb on + strand, within Xcc-8004.768.1 at 715.415 kb on - strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.486 kb on + strand, within Xcc-8004.768.1 at 715.487 kb on - strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.561 kb on + strand, within Xcc-8004.768.1 at 715.616 kb on - strand at 715.616 kb on - strand at 715.616 kb on - strand at 715.618 kb on + strand at 715.618 kb on + strand at 715.619 kb on - strand at 715.740 kb on + strand at 715.740 kb on + strand at 715.762 kb on + strand at 715.782 kb on + strand at 715.783 kb on - strand at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.920 kb on + strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 715.921 kb on - strand, within Xcc-8004.769.1 at 716.085 kb on + strand, within Xcc-8004.769.1 at 716.140 kb on + strand, within Xcc-8004.769.1 at 716.141 kb on - strand, within Xcc-8004.769.1 at 716.188 kb on + strand at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.256 kb on - strand, within Xcc-8004.770.1 at 716.323 kb on - strand at 716.323 kb on - strand at 716.480 kb on + strand, within Xcc-8004.771.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 713,858 + Xcc-8004.767.1 0.48 +0.0 713,858 + Xcc-8004.767.1 0.48 +0.2 713,858 + Xcc-8004.767.1 0.48 +0.0 713,858 + Xcc-8004.767.1 0.48 -0.5 713,859 - Xcc-8004.767.1 0.48 -0.9 713,912 - Xcc-8004.767.1 0.52 +3.4 713,912 - Xcc-8004.767.1 0.52 +1.2 714,135 + Xcc-8004.767.1 0.68 -0.0 714,232 + Xcc-8004.767.1 0.75 -1.2 714,236 - Xcc-8004.767.1 0.75 -0.2 714,236 - Xcc-8004.767.1 0.75 +0.2 714,236 - Xcc-8004.767.1 0.75 -1.9 714,299 + Xcc-8004.767.1 0.80 -1.7 714,515 - +1.6 714,565 - -0.5 714,565 - -0.9 714,566 + -0.9 714,567 - -0.9 714,567 - +0.3 714,704 + +0.1 714,705 - -0.2 714,705 - -0.1 714,716 + -0.9 714,716 + -0.9 714,772 + +0.2 714,772 + -2.4 714,895 + Xcc-8004.768.1 0.17 +3.2 714,896 - Xcc-8004.768.1 0.17 +0.1 714,904 + Xcc-8004.768.1 0.18 +1.0 714,904 + Xcc-8004.768.1 0.18 -0.2 714,905 - Xcc-8004.768.1 0.18 +1.0 714,905 - Xcc-8004.768.1 0.18 +0.4 714,905 - Xcc-8004.768.1 0.18 -0.2 715,072 + Xcc-8004.768.1 0.35 +0.7 715,072 + Xcc-8004.768.1 0.35 +0.9 715,079 - Xcc-8004.768.1 0.36 -0.7 715,079 - Xcc-8004.768.1 0.36 +1.0 715,079 - Xcc-8004.768.1 0.36 -0.4 715,087 + Xcc-8004.768.1 0.36 -0.6 715,087 + Xcc-8004.768.1 0.36 -0.9 715,088 - Xcc-8004.768.1 0.37 +0.9 715,156 - Xcc-8004.768.1 0.44 +0.0 715,269 + Xcc-8004.768.1 0.55 +1.3 715,270 - Xcc-8004.768.1 0.55 -2.1 715,313 - Xcc-8004.768.1 0.60 -2.2 715,345 + Xcc-8004.768.1 0.63 -0.5 715,346 - Xcc-8004.768.1 0.63 -0.2 715,414 + Xcc-8004.768.1 0.70 +0.8 715,415 - Xcc-8004.768.1 0.70 +2.1 715,486 + Xcc-8004.768.1 0.77 +0.2 715,486 + Xcc-8004.768.1 0.77 -0.5 715,487 - Xcc-8004.768.1 0.78 +0.4 715,561 + Xcc-8004.768.1 0.85 +0.1 715,561 + Xcc-8004.768.1 0.85 +0.1 715,616 - -0.4 715,616 - -0.4 715,616 - +1.8 715,618 + -1.1 715,618 + -0.2 715,619 - +0.1 715,740 + +1.3 715,740 + -0.3 715,762 + +1.0 715,782 + -0.1 715,783 - -0.2 715,920 + Xcc-8004.769.1 0.31 -0.6 715,920 + Xcc-8004.769.1 0.31 -1.5 715,920 + Xcc-8004.769.1 0.31 -0.4 715,920 + Xcc-8004.769.1 0.31 -0.2 715,921 - Xcc-8004.769.1 0.31 +0.3 715,921 - Xcc-8004.769.1 0.31 +0.1 716,085 + Xcc-8004.769.1 0.73 +0.1 716,140 + Xcc-8004.769.1 0.87 -0.4 716,141 - Xcc-8004.769.1 0.87 -0.2 716,188 + -0.1 716,252 - Xcc-8004.770.1 0.42 -1.2 716,252 - Xcc-8004.770.1 0.42 +0.4 716,256 - Xcc-8004.770.1 0.45 -0.4 716,323 - -0.6 716,323 - +0.1 716,480 + Xcc-8004.771.1 0.27 +1.6
Or see this region's nucleotide sequence