Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.642.1 and Xcc-8004.643.1 are separated by 126 nucleotides Xcc-8004.643.1 and Xcc-8004.644.1 are separated by 3 nucleotides Xcc-8004.644.1 and Xcc-8004.645.1 are separated by 79 nucleotides Xcc-8004.645.1 and Xcc-8004.646.1 are separated by 76 nucleotides
Xcc-8004.642.1: Xcc-8004.642.1 - FIG034602: Probable transmembrane protein, at 587,136 to 587,762
Xcc-8004.642.1
Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626
Xcc-8004.643.1
Xcc-8004.644.1: Xcc-8004.644.1 - Integral membrane protein CcmA involved in cell shape determination, at 588,630 to 589,082
Xcc-8004.644.1
Xcc-8004.645.1: Xcc-8004.645.1 - probable iron binding protein from the HesB_IscA_SufA family, at 589,162 to 589,548
Xcc-8004.645.1
Xcc-8004.646.1: Xcc-8004.646.1 - NADH pyrophosphatase (EC 3.6.1.22), at 589,625 to 590,524
Xcc-8004.646.1
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.698 kb on + strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.699 kb on - strand, within Xcc-8004.642.1 at 587.792 kb on + strand at 587.793 kb on - strand at 587.793 kb on - strand at 587.848 kb on + strand at 587.848 kb on + strand at 587.848 kb on + strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.897 kb on + strand at 587.897 kb on + strand at 587.897 kb on + strand at 587.898 kb on - strand at 587.898 kb on - strand at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.229 kb on + strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.230 kb on - strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.237 kb on + strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.238 kb on - strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.327 kb on + strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.328 kb on - strand, within Xcc-8004.643.1 at 588.474 kb on + strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.475 kb on - strand, within Xcc-8004.643.1 at 588.487 kb on - strand, within Xcc-8004.643.1 at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.624 kb on + strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.625 kb on - strand at 588.675 kb on - strand at 588.675 kb on - strand at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.732 kb on + strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.733 kb on - strand, within Xcc-8004.644.1 at 588.930 kb on + strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 588.931 kb on - strand, within Xcc-8004.644.1 at 589.167 kb on + strand at 589.167 kb on + strand at 589.207 kb on + strand, within Xcc-8004.645.1 at 589.725 kb on + strand, within Xcc-8004.646.1 at 589.725 kb on + strand, within Xcc-8004.646.1 at 589.726 kb on - strand, within Xcc-8004.646.1 at 589.726 kb on - strand, within Xcc-8004.646.1 at 589.826 kb on - strand, within Xcc-8004.646.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 587,698 + Xcc-8004.642.1 0.90 +0.2 587,698 + Xcc-8004.642.1 0.90 -2.3 587,698 + Xcc-8004.642.1 0.90 -1.7 587,698 + Xcc-8004.642.1 0.90 +0.4 587,699 - Xcc-8004.642.1 0.90 -1.9 587,699 - Xcc-8004.642.1 0.90 -0.4 587,699 - Xcc-8004.642.1 0.90 -0.6 587,699 - Xcc-8004.642.1 0.90 -0.2 587,699 - Xcc-8004.642.1 0.90 +2.0 587,699 - Xcc-8004.642.1 0.90 -0.7 587,699 - Xcc-8004.642.1 0.90 -0.6 587,699 - Xcc-8004.642.1 0.90 -1.4 587,792 + +0.5 587,793 - +1.1 587,793 - -1.0 587,848 + -0.5 587,848 + +0.5 587,848 + +0.1 587,849 - -1.3 587,849 - -0.5 587,849 - +2.9 587,897 + -0.8 587,897 + +0.3 587,897 + -0.1 587,898 - +1.1 587,898 - -0.4 588,229 + Xcc-8004.643.1 0.46 +0.4 588,229 + Xcc-8004.643.1 0.46 -0.3 588,229 + Xcc-8004.643.1 0.46 +1.7 588,229 + Xcc-8004.643.1 0.46 +0.6 588,229 + Xcc-8004.643.1 0.46 -0.7 588,229 + Xcc-8004.643.1 0.46 +2.0 588,230 - Xcc-8004.643.1 0.46 +0.8 588,230 - Xcc-8004.643.1 0.46 +2.4 588,230 - Xcc-8004.643.1 0.46 -0.2 588,237 + Xcc-8004.643.1 0.47 +0.3 588,237 + Xcc-8004.643.1 0.47 +0.5 588,237 + Xcc-8004.643.1 0.47 +0.4 588,237 + Xcc-8004.643.1 0.47 -0.0 588,237 + Xcc-8004.643.1 0.47 -1.1 588,238 - Xcc-8004.643.1 0.47 +0.2 588,238 - Xcc-8004.643.1 0.47 +3.5 588,238 - Xcc-8004.643.1 0.47 -0.5 588,238 - Xcc-8004.643.1 0.47 -0.0 588,238 - Xcc-8004.643.1 0.47 +1.2 588,238 - Xcc-8004.643.1 0.47 +1.0 588,238 - Xcc-8004.643.1 0.47 -0.5 588,238 - Xcc-8004.643.1 0.47 -0.4 588,238 - Xcc-8004.643.1 0.47 +0.2 588,238 - Xcc-8004.643.1 0.47 +1.0 588,327 + Xcc-8004.643.1 0.59 +0.5 588,327 + Xcc-8004.643.1 0.59 +0.5 588,327 + Xcc-8004.643.1 0.59 +1.5 588,327 + Xcc-8004.643.1 0.59 +1.6 588,327 + Xcc-8004.643.1 0.59 +0.4 588,327 + Xcc-8004.643.1 0.59 +0.2 588,327 + Xcc-8004.643.1 0.59 +0.7 588,327 + Xcc-8004.643.1 0.59 +0.0 588,328 - Xcc-8004.643.1 0.59 +0.5 588,328 - Xcc-8004.643.1 0.59 +1.0 588,328 - Xcc-8004.643.1 0.59 +0.5 588,328 - Xcc-8004.643.1 0.59 -0.1 588,328 - Xcc-8004.643.1 0.59 -0.2 588,328 - Xcc-8004.643.1 0.59 +0.0 588,328 - Xcc-8004.643.1 0.59 +1.0 588,474 + Xcc-8004.643.1 0.79 +1.2 588,475 - Xcc-8004.643.1 0.79 +1.2 588,475 - Xcc-8004.643.1 0.79 +0.2 588,475 - Xcc-8004.643.1 0.79 -0.2 588,487 - Xcc-8004.643.1 0.81 -1.2 588,624 + +0.3 588,624 + -0.7 588,624 + -0.2 588,624 + -1.1 588,624 + +0.2 588,624 + -0.0 588,624 + +0.7 588,625 - -1.0 588,625 - -0.5 588,625 - -0.4 588,625 - -0.4 588,625 - +0.1 588,625 - +0.0 588,625 - +0.1 588,675 - -0.2 588,675 - -0.3 588,732 + Xcc-8004.644.1 0.23 -0.4 588,732 + Xcc-8004.644.1 0.23 +0.7 588,732 + Xcc-8004.644.1 0.23 +0.5 588,732 + Xcc-8004.644.1 0.23 +0.6 588,732 + Xcc-8004.644.1 0.23 -1.7 588,732 + Xcc-8004.644.1 0.23 -0.6 588,732 + Xcc-8004.644.1 0.23 -0.5 588,732 + Xcc-8004.644.1 0.23 +0.2 588,732 + Xcc-8004.644.1 0.23 -0.1 588,732 + Xcc-8004.644.1 0.23 -0.4 588,732 + Xcc-8004.644.1 0.23 -0.7 588,732 + Xcc-8004.644.1 0.23 +1.1 588,732 + Xcc-8004.644.1 0.23 -0.5 588,732 + Xcc-8004.644.1 0.23 +0.1 588,733 - Xcc-8004.644.1 0.23 +0.3 588,733 - Xcc-8004.644.1 0.23 -1.4 588,733 - Xcc-8004.644.1 0.23 -0.6 588,733 - Xcc-8004.644.1 0.23 +0.5 588,733 - Xcc-8004.644.1 0.23 -3.3 588,733 - Xcc-8004.644.1 0.23 +0.1 588,733 - Xcc-8004.644.1 0.23 -0.8 588,733 - Xcc-8004.644.1 0.23 -0.2 588,733 - Xcc-8004.644.1 0.23 -0.5 588,733 - Xcc-8004.644.1 0.23 +0.0 588,733 - Xcc-8004.644.1 0.23 +0.4 588,733 - Xcc-8004.644.1 0.23 +0.4 588,733 - Xcc-8004.644.1 0.23 -0.1 588,733 - Xcc-8004.644.1 0.23 -0.4 588,930 + Xcc-8004.644.1 0.66 -0.5 588,931 - Xcc-8004.644.1 0.66 +1.1 588,931 - Xcc-8004.644.1 0.66 +1.7 588,931 - Xcc-8004.644.1 0.66 +1.2 589,167 + +0.2 589,167 + -0.0 589,207 + Xcc-8004.645.1 0.12 -0.8 589,725 + Xcc-8004.646.1 0.11 -0.7 589,725 + Xcc-8004.646.1 0.11 -2.4 589,726 - Xcc-8004.646.1 0.11 -0.3 589,726 - Xcc-8004.646.1 0.11 +0.4 589,826 - Xcc-8004.646.1 0.22 +1.7
Or see this region's nucleotide sequence