Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.616.1 and Xcc-8004.618.1 are separated by 145 nucleotides Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides Xcc-8004.619.1 and Xcc-8004.621.1 are separated by 124 nucleotides
Xcc-8004.616.1: Xcc-8004.616.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 569,488 to 571,104
Xcc-8004.616.1
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.961 kb on + strand at 570.962 kb on - strand at 571.156 kb on - strand at 571.263 kb on + strand at 571.267 kb on + strand at 571.268 kb on - strand at 571.268 kb on - strand at 571.271 kb on + strand at 571.272 kb on - strand at 571.272 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.302 kb on - strand at 571.514 kb on + strand, within Xcc-8004.618.1 at 571.613 kb on + strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.628 kb on + strand, within Xcc-8004.618.1 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.480 kb on + strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.531 kb on + strand at 572.624 kb on + strand at 572.625 kb on - strand at 572.692 kb on - strand at 572.692 kb on - strand at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.448 kb on + strand, within Xcc-8004.621.1 at 573.457 kb on - strand, within Xcc-8004.621.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 570,961 + +1.9 570,962 - +0.5 571,156 - -1.1 571,263 + +0.1 571,267 + +0.4 571,268 - -0.1 571,268 - -1.7 571,271 + -0.2 571,272 - +0.1 571,272 - -0.5 571,286 + +0.2 571,286 + +0.7 571,287 - -1.2 571,287 - -1.3 571,287 - -1.2 571,302 - -0.7 571,514 + Xcc-8004.618.1 0.46 +0.0 571,613 + Xcc-8004.618.1 0.63 -0.1 571,614 - Xcc-8004.618.1 0.63 +0.5 571,614 - Xcc-8004.618.1 0.63 +2.5 571,614 - Xcc-8004.618.1 0.63 -0.1 571,628 + Xcc-8004.618.1 0.65 +0.6 571,928 + +0.1 571,928 + +1.9 571,929 - -1.4 572,124 - Xcc-8004.619.1 0.27 -0.8 572,124 - Xcc-8004.619.1 0.27 -0.6 572,124 - Xcc-8004.619.1 0.27 +0.4 572,480 + Xcc-8004.619.1 0.83 +0.5 572,481 - Xcc-8004.619.1 0.84 -3.0 572,481 - Xcc-8004.619.1 0.84 +0.8 572,531 + +0.2 572,624 + +1.7 572,625 - +0.3 572,692 - -0.1 572,692 - +0.0 573,171 + Xcc-8004.621.1 0.45 -0.4 573,171 + Xcc-8004.621.1 0.45 +0.5 573,171 + Xcc-8004.621.1 0.45 +1.9 573,172 - Xcc-8004.621.1 0.45 -0.4 573,172 - Xcc-8004.621.1 0.45 -0.3 573,448 + Xcc-8004.621.1 0.71 +0.4 573,457 - Xcc-8004.621.1 0.72 -0.6
Or see this region's nucleotide sequence