Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5132.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5131.1 and Xcc-8004.5132.1 overlap by 4 nucleotidesXcc-8004.5132.1 and Xcc-8004.5133.1 are separated by 55 nucleotidesXcc-8004.5133.1 and Xcc-8004.5134.1 are separated by 222 nucleotides Xcc-8004.5131.1: Xcc-8004.5131.1 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 4,863,081 to 4,864,562 Xcc-8004.5131.1 Xcc-8004.5132.1: Xcc-8004.5132.1 - Heavy metal RND efflux outer membrane protein, CzcC family, at 4,864,559 to 4,865,824 Xcc-8004.5132.1 Xcc-8004.5133.1: Xcc-8004.5133.1 - FIG01212313: hypothetical protein, at 4,865,880 to 4,866,263 Xcc-8004.5133.1 Xcc-8004.5134.1: Xcc-8004.5134.1 - FIG01113058: hypothetical protein, at 4,866,486 to 4,868,303 Xcc-8004.5134.1 Position (kb) 4864 4865 4866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4863.652 kb on + strand, within Xcc-8004.5131.1at 4863.652 kb on + strand, within Xcc-8004.5131.1at 4863.653 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.805 kb on - strand, within Xcc-8004.5131.1at 4863.805 kb on - strand, within Xcc-8004.5131.1at 4863.902 kb on - strand, within Xcc-8004.5131.1at 4863.910 kb on + strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4864.109 kb on - strand, within Xcc-8004.5131.1at 4864.123 kb on + strand, within Xcc-8004.5131.1at 4864.123 kb on + strand, within Xcc-8004.5131.1at 4864.123 kb on + strand, within Xcc-8004.5131.1at 4864.123 kb on + strand, within Xcc-8004.5131.1at 4864.123 kb on + strand, within Xcc-8004.5131.1at 4864.124 kb on - strand, within Xcc-8004.5131.1at 4864.124 kb on - strand, within Xcc-8004.5131.1at 4864.124 kb on - strand, within Xcc-8004.5131.1at 4864.124 kb on - strand, within Xcc-8004.5131.1at 4864.705 kb on - strand, within Xcc-8004.5132.1at 4864.705 kb on - strand, within Xcc-8004.5132.1at 4864.705 kb on - strand, within Xcc-8004.5132.1at 4864.705 kb on - strand, within Xcc-8004.5132.1at 4864.813 kb on - strand, within Xcc-8004.5132.1at 4864.842 kb on + strand, within Xcc-8004.5132.1at 4864.842 kb on + strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4864.843 kb on - strand, within Xcc-8004.5132.1at 4865.760 kb on - strandat 4865.760 kb on - strandat 4865.760 kb on - strandat 4866.025 kb on + strand, within Xcc-8004.5133.1at 4866.025 kb on + strand, within Xcc-8004.5133.1at 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.279 kb on + strandat 4866.280 kb on - strandat 4866.280 kb on - strandat 4866.280 kb on - strandat 4866.295 kb on + strandat 4866.333 kb on + strandat 4866.333 kb on + strandat 4866.333 kb on + strandat 4866.334 kb on - strandat 4866.334 kb on - strandat 4866.334 kb on - strandat 4866.419 kb on + strandat 4866.419 kb on + strandat 4866.419 kb on + strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.695 kb on - strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.781 kb on + strand, within Xcc-8004.5134.1at 4866.781 kb on + strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,863,652 + Xcc-8004.5131.1 0.39 +0.3
4,863,652 + Xcc-8004.5131.1 0.39 -2.7
4,863,653 - Xcc-8004.5131.1 0.39 -1.9
4,863,691 - Xcc-8004.5131.1 0.41 +0.1
4,863,691 - Xcc-8004.5131.1 0.41 +1.8
4,863,691 - Xcc-8004.5131.1 0.41 -0.4
4,863,691 - Xcc-8004.5131.1 0.41 +0.8
4,863,804 + Xcc-8004.5131.1 0.49 +0.3
4,863,804 + Xcc-8004.5131.1 0.49 -0.2
4,863,804 + Xcc-8004.5131.1 0.49 -0.4
4,863,805 - Xcc-8004.5131.1 0.49 +1.1
4,863,805 - Xcc-8004.5131.1 0.49 -0.3
4,863,902 - Xcc-8004.5131.1 0.55 +1.0
4,863,910 + Xcc-8004.5131.1 0.56 -1.0
4,863,911 - Xcc-8004.5131.1 0.56 -0.8
4,863,911 - Xcc-8004.5131.1 0.56 -3.5
4,863,911 - Xcc-8004.5131.1 0.56 +0.6
4,863,911 - Xcc-8004.5131.1 0.56 -0.9
4,864,109 - Xcc-8004.5131.1 0.69 +0.5
4,864,123 + Xcc-8004.5131.1 0.70 -0.4
4,864,123 + Xcc-8004.5131.1 0.70 -0.4
4,864,123 + Xcc-8004.5131.1 0.70 -0.9
4,864,123 + Xcc-8004.5131.1 0.70 -0.4
4,864,123 + Xcc-8004.5131.1 0.70 -0.3
4,864,124 - Xcc-8004.5131.1 0.70 -0.1
4,864,124 - Xcc-8004.5131.1 0.70 +1.6
4,864,124 - Xcc-8004.5131.1 0.70 -1.2
4,864,124 - Xcc-8004.5131.1 0.70 -1.0
4,864,705 - Xcc-8004.5132.1 0.12 -1.1
4,864,705 - Xcc-8004.5132.1 0.12 -0.3
4,864,705 - Xcc-8004.5132.1 0.12 -1.5
4,864,705 - Xcc-8004.5132.1 0.12 +0.8
4,864,813 - Xcc-8004.5132.1 0.20 -1.1
4,864,842 + Xcc-8004.5132.1 0.22 +0.2
4,864,842 + Xcc-8004.5132.1 0.22 +0.5
4,864,843 - Xcc-8004.5132.1 0.22 +0.1
4,864,843 - Xcc-8004.5132.1 0.22 -0.8
4,864,843 - Xcc-8004.5132.1 0.22 +0.7
4,864,843 - Xcc-8004.5132.1 0.22 +0.6
4,864,843 - Xcc-8004.5132.1 0.22 -0.7
4,864,843 - Xcc-8004.5132.1 0.22 -0.0
4,864,843 - Xcc-8004.5132.1 0.22 -1.0
4,864,843 - Xcc-8004.5132.1 0.22 +0.7
4,865,760 - +0.7
4,865,760 - -1.2
4,865,760 - +1.0
4,866,025 + Xcc-8004.5133.1 0.38 -0.9
4,866,025 + Xcc-8004.5133.1 0.38 +0.7
4,866,277 + +1.1
4,866,277 + -0.7
4,866,277 + -0.4
4,866,277 + +0.5
4,866,277 + -0.7
4,866,278 - -0.8
4,866,278 - +0.2
4,866,278 - +0.7
4,866,278 - +0.0
4,866,279 + -0.1
4,866,280 - -0.9
4,866,280 - -1.1
4,866,280 - +0.3
4,866,295 + +0.2
4,866,333 + -0.4
4,866,333 + +0.2
4,866,333 + +0.5
4,866,334 - +0.6
4,866,334 - -0.0
4,866,334 - -2.3
4,866,419 + +1.0
4,866,419 + +0.6
4,866,419 + -2.2
4,866,420 - -0.5
4,866,420 - +0.3
4,866,420 - -0.6
4,866,420 - +0.1
4,866,420 - -1.5
4,866,420 - -0.2
4,866,601 - -1.3
4,866,601 - +0.4
4,866,601 - +1.1
4,866,601 - +0.2
4,866,694 + Xcc-8004.5134.1 0.11 +0.6
4,866,694 + Xcc-8004.5134.1 0.11 +0.8
4,866,694 + Xcc-8004.5134.1 0.11 +1.4
4,866,694 + Xcc-8004.5134.1 0.11 -0.4
4,866,695 - Xcc-8004.5134.1 0.11 +0.2
4,866,724 + Xcc-8004.5134.1 0.13 -0.2
4,866,724 + Xcc-8004.5134.1 0.13 +0.2
4,866,724 + Xcc-8004.5134.1 0.13 -0.9
4,866,724 + Xcc-8004.5134.1 0.13 +0.8
4,866,724 + Xcc-8004.5134.1 0.13 -0.1
4,866,724 + Xcc-8004.5134.1 0.13 -0.2
4,866,724 + Xcc-8004.5134.1 0.13 -1.0
4,866,724 + Xcc-8004.5134.1 0.13 -0.4
4,866,724 + Xcc-8004.5134.1 0.13 +0.4
4,866,725 - Xcc-8004.5134.1 0.13 -0.8
4,866,725 - Xcc-8004.5134.1 0.13 -1.6
4,866,725 - Xcc-8004.5134.1 0.13 +0.5
4,866,725 - Xcc-8004.5134.1 0.13 +1.0
4,866,781 + Xcc-8004.5134.1 0.16 -0.0
4,866,781 + Xcc-8004.5134.1 0.16 -1.9
4,866,782 - Xcc-8004.5134.1 0.16 -0.9
4,866,782 - Xcc-8004.5134.1 0.16 -0.1
4,866,782 - Xcc-8004.5134.1 0.16 -1.7
4,866,782 - Xcc-8004.5134.1 0.16 -0.0

Or see this region's nucleotide sequence