Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5118.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,852,764	+		Xcc-8004.5117.1	0.34	-0.1
4,852,764	+		Xcc-8004.5117.1	0.34	-2.3
4,852,765	-		Xcc-8004.5117.1	0.34	-0.4
4,852,789	-		Xcc-8004.5117.1	0.36	-1.5
4,852,847	+		Xcc-8004.5117.1	0.40	-0.4
4,852,848	-		Xcc-8004.5117.1	0.40	+1.2
4,853,008	+		Xcc-8004.5117.1	0.53	-0.2
4,853,008	+		Xcc-8004.5117.1	0.53	+0.2
4,853,008	+		Xcc-8004.5117.1	0.53	+0.6
4,853,009	-		Xcc-8004.5117.1	0.53	-0.2
4,853,009	-		Xcc-8004.5117.1	0.53	-0.3
4,853,009	-		Xcc-8004.5117.1	0.53	+0.7
4,853,009	-		Xcc-8004.5117.1	0.53	-0.1
4,853,009	-		Xcc-8004.5117.1	0.53	-0.1
4,853,021	+		Xcc-8004.5117.1	0.54	-1.3
4,853,022	-		Xcc-8004.5117.1	0.54	-2.1
4,853,235	+		Xcc-8004.5117.1	0.71	-1.2
4,853,236	-		Xcc-8004.5117.1	0.71	+0.7
4,853,236	-		Xcc-8004.5117.1	0.71	+0.2
4,853,236	-		Xcc-8004.5117.1	0.71	-0.9
4,853,236	-		Xcc-8004.5117.1	0.71	-0.7
4,853,280	+		Xcc-8004.5117.1	0.75	-0.3
4,853,280	+		Xcc-8004.5117.1	0.75	-0.2
4,853,280	+		Xcc-8004.5117.1	0.75	-1.1
4,853,280	+		Xcc-8004.5117.1	0.75	+0.2
4,853,281	-		Xcc-8004.5117.1	0.75	+0.6
4,853,281	-		Xcc-8004.5117.1	0.75	+0.6
4,853,281	-		Xcc-8004.5117.1	0.75	-1.4
4,853,281	-		Xcc-8004.5117.1	0.75	-1.2
4,853,281	-		Xcc-8004.5117.1	0.75	-0.2
4,853,281	-		Xcc-8004.5117.1	0.75	-1.7
4,853,281	-		Xcc-8004.5117.1	0.75	-0.4
4,853,281	-		Xcc-8004.5117.1	0.75	-1.1
4,853,281	-		Xcc-8004.5117.1	0.75	-0.9
4,853,604	+				-0.1
4,853,604	+				-0.4
4,853,604	+				+0.5
4,853,604	+				-1.4
4,853,604	+				-0.3
4,853,604	+				-0.8
4,853,604	+				-0.8
4,853,605	-				+0.7
4,853,605	-				-0.1
4,853,605	-				-0.3
4,853,605	-				-0.9
4,853,647	-				-0.3
4,853,647	-				+0.7
4,853,650	+				-0.3
4,853,650	+				-1.0
4,853,650	+				+0.4
4,853,650	+				+0.3
4,853,651	-				-0.7
4,853,651	-				-1.8
4,853,665	+				-0.4
4,853,666	-				-0.9
4,853,666	-				-1.0
4,853,671	+				-1.2
4,853,672	-				+0.9
4,853,728	-				-0.1
4,853,875	+		Xcc-8004.5118.1	0.20	-2.0
4,853,876	-		Xcc-8004.5118.1	0.20	-0.2
4,853,876	-		Xcc-8004.5118.1	0.20	-0.6
4,853,876	-		Xcc-8004.5118.1	0.20	-0.8
4,853,876	-		Xcc-8004.5118.1	0.20	+0.5
4,854,367	+				-1.2
4,854,367	+				-0.1
4,854,367	+				-0.0
4,854,367	+				+0.6
4,854,367	+				+0.6
4,854,368	-				-0.5
4,854,368	-				+0.1
4,854,368	-				-1.2
4,854,368	-				-0.6
4,854,368	-				+0.5
4,854,368	-				-1.1
4,854,368	-				-0.1
4,854,368	-				-0.8
4,854,368	-				-1.2
4,854,406	+				-0.8
4,854,406	+				-1.0
4,854,407	-				+0.6
4,854,407	-				-0.1
4,854,407	-				+0.1
4,854,407	-				+0.9
4,854,524	+		Xcc-8004.5119.1	0.11	-0.4
4,854,597	+		Xcc-8004.5119.1	0.18	-0.4
4,854,597	+		Xcc-8004.5119.1	0.18	-0.9
4,854,632	+		Xcc-8004.5119.1	0.21	-0.8
4,854,632	+		Xcc-8004.5119.1	0.21	+0.8
4,854,632	+		Xcc-8004.5119.1	0.21	+0.6
4,854,632	+		Xcc-8004.5119.1	0.21	+1.2
4,854,632	+		Xcc-8004.5119.1	0.21	+0.1
4,854,633	-		Xcc-8004.5119.1	0.21	+1.6
4,854,633	-		Xcc-8004.5119.1	0.21	+1.5
4,854,633	-		Xcc-8004.5119.1	0.21	-0.8
4,854,633	-		Xcc-8004.5119.1	0.21	-0.4
4,854,836	+		Xcc-8004.5119.1	0.41	-1.1
4,854,836	+		Xcc-8004.5119.1	0.41	-0.3
4,854,837	-		Xcc-8004.5119.1	0.41	-1.6
4,854,837	-		Xcc-8004.5119.1	0.41	-0.5
4,854,837	-		Xcc-8004.5119.1	0.41	-1.2
4,855,008	+		Xcc-8004.5119.1	0.57	-0.5
4,855,009	-		Xcc-8004.5119.1	0.57	-2.6
4,855,009	-		Xcc-8004.5119.1	0.57	+0.6