Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4954.1 and Xcc-8004.4955.1 are separated by 242 nucleotides Xcc-8004.4955.1 and Xcc-8004.4956.1 overlap by 4 nucleotides Xcc-8004.4956.1 and Xcc-8004.4957.1 overlap by 4 nucleotides Xcc-8004.4957.1 and Xcc-8004.4958.1 overlap by 69 nucleotides
Xcc-8004.4954.1: Xcc-8004.4954.1 - Peptidase B (EC 3.4.11.23), at 4,706,661 to 4,708,031
Xcc-8004.4954.1
Xcc-8004.4955.1: Xcc-8004.4955.1 - Catalase (EC 1.11.1.6), at 4,708,274 to 4,709,365
Xcc-8004.4955.1
Xcc-8004.4956.1: Xcc-8004.4956.1 - Cytochrome B561, at 4,709,362 to 4,709,904
Xcc-8004.4956.1
Xcc-8004.4957.1: Xcc-8004.4957.1 - hypothetical protein, at 4,709,901 to 4,710,008
Xcc-8004.4957.1
Xcc-8004.4958.1: Xcc-8004.4958.1 - Mobile element protein, at 4,709,940 to 4,711,154
Xcc-8004.4958.1
Position (kb) 4708
4709
4710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4707.615 kb on + strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.799 kb on - strand, within Xcc-8004.4954.1 at 4707.807 kb on + strand, within Xcc-8004.4954.1 at 4707.808 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.893 kb on + strand, within Xcc-8004.4954.1 at 4707.930 kb on + strand at 4707.930 kb on + strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.166 kb on - strand at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.884 kb on - strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.211 kb on - strand, within Xcc-8004.4955.1 at 4709.211 kb on - strand, within Xcc-8004.4955.1 at 4709.327 kb on - strand at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.755 kb on + strand, within Xcc-8004.4956.1 at 4709.756 kb on - strand, within Xcc-8004.4956.1 at 4709.791 kb on + strand, within Xcc-8004.4956.1 at 4709.792 kb on - strand, within Xcc-8004.4956.1 at 4709.924 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.942 kb on - strand at 4709.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,707,615 + Xcc-8004.4954.1 0.70 +1.3 4,707,616 - Xcc-8004.4954.1 0.70 +0.1 4,707,616 - Xcc-8004.4954.1 0.70 +0.9 4,707,616 - Xcc-8004.4954.1 0.70 +0.0 4,707,798 + Xcc-8004.4954.1 0.83 +1.2 4,707,798 + Xcc-8004.4954.1 0.83 -0.6 4,707,798 + Xcc-8004.4954.1 0.83 -0.6 4,707,799 - Xcc-8004.4954.1 0.83 -1.2 4,707,807 + Xcc-8004.4954.1 0.84 -0.9 4,707,808 - Xcc-8004.4954.1 0.84 -0.9 4,707,880 - Xcc-8004.4954.1 0.89 +0.2 4,707,880 - Xcc-8004.4954.1 0.89 +0.3 4,707,893 + Xcc-8004.4954.1 0.90 -1.3 4,707,930 + -0.4 4,707,930 + +1.5 4,707,931 - -0.3 4,707,931 - -1.9 4,707,931 - +0.1 4,707,931 - +0.4 4,707,931 - -0.9 4,707,931 - -0.3 4,708,165 + +0.7 4,708,165 + +0.3 4,708,165 + +0.6 4,708,165 + +0.5 4,708,166 - -0.8 4,708,475 - Xcc-8004.4955.1 0.18 +0.6 4,708,475 - Xcc-8004.4955.1 0.18 +0.2 4,708,883 + Xcc-8004.4955.1 0.56 +0.8 4,708,883 + Xcc-8004.4955.1 0.56 -0.1 4,708,883 + Xcc-8004.4955.1 0.56 +1.2 4,708,884 - Xcc-8004.4955.1 0.56 -0.2 4,708,934 + Xcc-8004.4955.1 0.60 -0.2 4,708,934 + Xcc-8004.4955.1 0.60 +1.6 4,708,934 + Xcc-8004.4955.1 0.60 +0.2 4,709,210 + Xcc-8004.4955.1 0.86 -0.2 4,709,210 + Xcc-8004.4955.1 0.86 +0.1 4,709,210 + Xcc-8004.4955.1 0.86 -1.6 4,709,210 + Xcc-8004.4955.1 0.86 +0.5 4,709,211 - Xcc-8004.4955.1 0.86 -1.0 4,709,211 - Xcc-8004.4955.1 0.86 -0.9 4,709,327 - -1.2 4,709,635 + Xcc-8004.4956.1 0.50 +0.2 4,709,635 + Xcc-8004.4956.1 0.50 -2.1 4,709,635 + Xcc-8004.4956.1 0.50 -0.7 4,709,635 + Xcc-8004.4956.1 0.50 +0.9 4,709,636 - Xcc-8004.4956.1 0.50 -0.3 4,709,636 - Xcc-8004.4956.1 0.50 -2.0 4,709,636 - Xcc-8004.4956.1 0.50 -3.5 4,709,755 + Xcc-8004.4956.1 0.72 +1.0 4,709,756 - Xcc-8004.4956.1 0.73 -0.4 4,709,791 + Xcc-8004.4956.1 0.79 -1.2 4,709,792 - Xcc-8004.4956.1 0.79 -0.6 4,709,924 - Xcc-8004.4957.1 0.21 -0.3 4,709,929 - Xcc-8004.4957.1 0.26 -1.7 4,709,929 - Xcc-8004.4957.1 0.26 -1.2 4,709,929 - Xcc-8004.4957.1 0.26 -0.6 4,709,942 - +1.1 4,709,949 - +1.2
Or see this region's nucleotide sequence