Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4953.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4952.1 and Xcc-8004.4953.1 are separated by 114 nucleotidesXcc-8004.4953.1 and Xcc-8004.4954.1 are separated by 60 nucleotides Xcc-8004.4952.1: Xcc-8004.4952.1 - transport protein, at 4,704,648 to 4,705,754 Xcc-8004.4952.1 Xcc-8004.4953.1: Xcc-8004.4953.1 - Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase, at 4,705,869 to 4,706,600 Xcc-8004.4953.1 Xcc-8004.4954.1: Xcc-8004.4954.1 - Peptidase B (EC 3.4.11.23), at 4,706,661 to 4,708,031 Xcc-8004.4954.1 Position (kb) 4705 4706 4707Strain fitness (log2 ratio) -2 -1 0 1 2at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.311 kb on + strand, within Xcc-8004.4952.1at 4705.311 kb on + strand, within Xcc-8004.4952.1at 4705.312 kb on - strand, within Xcc-8004.4952.1at 4705.312 kb on - strand, within Xcc-8004.4952.1at 4705.337 kb on + strand, within Xcc-8004.4952.1at 4705.337 kb on + strand, within Xcc-8004.4952.1at 4705.338 kb on - strand, within Xcc-8004.4952.1at 4705.338 kb on - strand, within Xcc-8004.4952.1at 4705.355 kb on - strand, within Xcc-8004.4952.1at 4705.375 kb on + strand, within Xcc-8004.4952.1at 4705.376 kb on - strand, within Xcc-8004.4952.1at 4705.376 kb on - strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.444 kb on - strand, within Xcc-8004.4952.1at 4705.536 kb on + strand, within Xcc-8004.4952.1at 4705.536 kb on + strand, within Xcc-8004.4952.1at 4705.537 kb on - strand, within Xcc-8004.4952.1at 4705.540 kb on + strand, within Xcc-8004.4952.1at 4705.540 kb on + strand, within Xcc-8004.4952.1at 4705.541 kb on - strand, within Xcc-8004.4952.1at 4705.541 kb on - strand, within Xcc-8004.4952.1at 4705.857 kb on + strandat 4705.858 kb on - strandat 4705.858 kb on - strandat 4705.858 kb on - strandat 4705.858 kb on - strandat 4705.959 kb on + strand, within Xcc-8004.4953.1at 4705.959 kb on + strand, within Xcc-8004.4953.1at 4705.960 kb on - strand, within Xcc-8004.4953.1at 4705.960 kb on - strand, within Xcc-8004.4953.1at 4705.960 kb on - strand, within Xcc-8004.4953.1at 4705.960 kb on - strand, within Xcc-8004.4953.1at 4706.148 kb on + strand, within Xcc-8004.4953.1at 4706.148 kb on + strand, within Xcc-8004.4953.1at 4706.149 kb on - strand, within Xcc-8004.4953.1at 4706.149 kb on - strand, within Xcc-8004.4953.1at 4706.160 kb on + strand, within Xcc-8004.4953.1at 4706.160 kb on + strand, within Xcc-8004.4953.1at 4706.160 kb on + strand, within Xcc-8004.4953.1at 4706.160 kb on + strand, within Xcc-8004.4953.1at 4706.161 kb on - strand, within Xcc-8004.4953.1at 4706.161 kb on - strand, within Xcc-8004.4953.1at 4706.161 kb on - strand, within Xcc-8004.4953.1at 4706.161 kb on - strand, within Xcc-8004.4953.1at 4706.188 kb on - strand, within Xcc-8004.4953.1at 4706.884 kb on - strand, within Xcc-8004.4954.1at 4706.884 kb on - strand, within Xcc-8004.4954.1at 4706.889 kb on + strand, within Xcc-8004.4954.1at 4706.890 kb on - strand, within Xcc-8004.4954.1at 4707.113 kb on + strand, within Xcc-8004.4954.1at 4707.113 kb on + strand, within Xcc-8004.4954.1at 4707.113 kb on + strand, within Xcc-8004.4954.1at 4707.113 kb on + strand, within Xcc-8004.4954.1at 4707.113 kb on + strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1at 4707.114 kb on - strand, within Xcc-8004.4954.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,705,206 + Xcc-8004.4952.1 0.50 +2.7
4,705,206 + Xcc-8004.4952.1 0.50 +0.4
4,705,206 + Xcc-8004.4952.1 0.50 +0.7
4,705,206 + Xcc-8004.4952.1 0.50 +1.3
4,705,206 + Xcc-8004.4952.1 0.50 +0.9
4,705,207 - Xcc-8004.4952.1 0.50 +0.9
4,705,207 - Xcc-8004.4952.1 0.50 +2.5
4,705,207 - Xcc-8004.4952.1 0.50 -0.4
4,705,207 - Xcc-8004.4952.1 0.50 +1.0
4,705,207 - Xcc-8004.4952.1 0.50 +0.4
4,705,207 - Xcc-8004.4952.1 0.50 +0.4
4,705,207 - Xcc-8004.4952.1 0.50 +0.9
4,705,311 + Xcc-8004.4952.1 0.60 +0.1
4,705,311 + Xcc-8004.4952.1 0.60 +2.0
4,705,312 - Xcc-8004.4952.1 0.60 +0.2
4,705,312 - Xcc-8004.4952.1 0.60 +2.0
4,705,337 + Xcc-8004.4952.1 0.62 -0.2
4,705,337 + Xcc-8004.4952.1 0.62 +1.9
4,705,338 - Xcc-8004.4952.1 0.62 -0.3
4,705,338 - Xcc-8004.4952.1 0.62 -2.0
4,705,355 - Xcc-8004.4952.1 0.64 +0.3
4,705,375 + Xcc-8004.4952.1 0.66 -0.2
4,705,376 - Xcc-8004.4952.1 0.66 +1.1
4,705,376 - Xcc-8004.4952.1 0.66 -0.2
4,705,443 + Xcc-8004.4952.1 0.72 +0.0
4,705,443 + Xcc-8004.4952.1 0.72 +1.2
4,705,443 + Xcc-8004.4952.1 0.72 +1.1
4,705,444 - Xcc-8004.4952.1 0.72 +0.4
4,705,536 + Xcc-8004.4952.1 0.80 -1.1
4,705,536 + Xcc-8004.4952.1 0.80 +0.9
4,705,537 - Xcc-8004.4952.1 0.80 +0.0
4,705,540 + Xcc-8004.4952.1 0.81 +0.4
4,705,540 + Xcc-8004.4952.1 0.81 +0.7
4,705,541 - Xcc-8004.4952.1 0.81 +0.9
4,705,541 - Xcc-8004.4952.1 0.81 -0.6
4,705,857 + -0.3
4,705,858 - +0.7
4,705,858 - -1.0
4,705,858 - +0.6
4,705,858 - -0.0
4,705,959 + Xcc-8004.4953.1 0.12 +0.3
4,705,959 + Xcc-8004.4953.1 0.12 +2.4
4,705,960 - Xcc-8004.4953.1 0.12 +0.4
4,705,960 - Xcc-8004.4953.1 0.12 +1.4
4,705,960 - Xcc-8004.4953.1 0.12 +0.5
4,705,960 - Xcc-8004.4953.1 0.12 -0.6
4,706,148 + Xcc-8004.4953.1 0.38 -0.2
4,706,148 + Xcc-8004.4953.1 0.38 +0.4
4,706,149 - Xcc-8004.4953.1 0.38 -0.4
4,706,149 - Xcc-8004.4953.1 0.38 -0.4
4,706,160 + Xcc-8004.4953.1 0.40 +1.0
4,706,160 + Xcc-8004.4953.1 0.40 -0.4
4,706,160 + Xcc-8004.4953.1 0.40 -1.2
4,706,160 + Xcc-8004.4953.1 0.40 -0.1
4,706,161 - Xcc-8004.4953.1 0.40 -0.7
4,706,161 - Xcc-8004.4953.1 0.40 +0.6
4,706,161 - Xcc-8004.4953.1 0.40 -0.5
4,706,161 - Xcc-8004.4953.1 0.40 -0.1
4,706,188 - Xcc-8004.4953.1 0.44 -0.7
4,706,884 - Xcc-8004.4954.1 0.16 +1.1
4,706,884 - Xcc-8004.4954.1 0.16 -0.3
4,706,889 + Xcc-8004.4954.1 0.17 -0.5
4,706,890 - Xcc-8004.4954.1 0.17 -0.4
4,707,113 + Xcc-8004.4954.1 0.33 -0.0
4,707,113 + Xcc-8004.4954.1 0.33 -0.0
4,707,113 + Xcc-8004.4954.1 0.33 +1.1
4,707,113 + Xcc-8004.4954.1 0.33 +0.2
4,707,113 + Xcc-8004.4954.1 0.33 -2.3
4,707,114 - Xcc-8004.4954.1 0.33 +0.8
4,707,114 - Xcc-8004.4954.1 0.33 -0.2
4,707,114 - Xcc-8004.4954.1 0.33 -0.5
4,707,114 - Xcc-8004.4954.1 0.33 -0.6
4,707,114 - Xcc-8004.4954.1 0.33 -0.8
4,707,114 - Xcc-8004.4954.1 0.33 +1.0

Or see this region's nucleotide sequence