Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4946.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,698,813	+		Xcc-8004.4944.1	0.60	+0.4
4,698,850	+		Xcc-8004.4944.1	0.63	+0.2
4,698,850	+		Xcc-8004.4944.1	0.63	-1.0
4,698,850	+		Xcc-8004.4944.1	0.63	-1.7
4,698,850	+		Xcc-8004.4944.1	0.63	+0.3
4,698,850	+		Xcc-8004.4944.1	0.63	-2.1
4,698,850	+		Xcc-8004.4944.1	0.63	+0.0
4,698,851	-		Xcc-8004.4944.1	0.63	-0.5
4,698,851	-		Xcc-8004.4944.1	0.63	+0.9
4,698,851	-		Xcc-8004.4944.1	0.63	-0.7
4,699,122	+		Xcc-8004.4944.1	0.86	-0.9
4,699,123	-		Xcc-8004.4944.1	0.86	-1.5
4,699,215	+				+0.5
4,699,215	+				-1.1
4,699,216	-				+0.2
4,699,216	-				+0.2
4,699,216	-				-0.1
4,699,216	-				+0.2
4,699,335	+				+0.6
4,699,336	-				+0.4
4,699,357	+				+0.4
4,699,357	+				-0.2
4,699,358	-				-0.1
4,699,358	-				-1.2
4,699,474	-		Xcc-8004.4945.1	0.27	-0.8
4,699,742	+				+0.0
4,699,742	+				-0.8
4,699,742	+				+0.2
4,699,743	-				-0.5
4,699,743	-				+1.1
4,699,750	+				+0.2
4,699,750	+				+1.0
4,699,750	+				+0.8
4,699,750	+				-0.1
4,699,750	+				-1.1
4,699,750	+				-0.2
4,699,751	-				-0.7
4,699,751	-				-0.2
4,699,751	-				+0.5
4,699,751	-				-0.9
4,699,751	-				+0.8
4,699,751	-				+1.6
4,699,807	-				-0.5
4,699,838	+		Xcc-8004.4946.1	0.13	-0.4
4,699,840	+		Xcc-8004.4946.1	0.13	-0.7
4,699,840	+		Xcc-8004.4946.1	0.13	-0.4
4,699,863	-		Xcc-8004.4946.1	0.17	+0.2
4,699,904	+		Xcc-8004.4946.1	0.23	-0.4
4,699,910	+		Xcc-8004.4946.1	0.24	-1.8
4,699,911	-		Xcc-8004.4946.1	0.24	-0.3
4,699,970	+		Xcc-8004.4946.1	0.33	+0.0
4,699,971	-		Xcc-8004.4946.1	0.33	-2.0
4,699,971	-		Xcc-8004.4946.1	0.33	-1.6
4,699,971	-		Xcc-8004.4946.1	0.33	-0.9
4,700,001	+		Xcc-8004.4946.1	0.38	+0.1
4,700,033	+		Xcc-8004.4946.1	0.43	-1.1
4,700,033	+		Xcc-8004.4946.1	0.43	-0.6
4,700,034	-		Xcc-8004.4946.1	0.43	-1.8
4,700,192	+		Xcc-8004.4946.1	0.67	-0.2
4,700,192	+		Xcc-8004.4946.1	0.67	-0.0
4,700,192	+		Xcc-8004.4946.1	0.67	+0.7
4,700,192	+		Xcc-8004.4946.1	0.67	+1.0
4,700,250	-		Xcc-8004.4946.1	0.75	+1.2
4,700,250	-		Xcc-8004.4946.1	0.75	+0.1
4,700,297	+		Xcc-8004.4946.1	0.82	+0.4
4,700,298	-		Xcc-8004.4946.1	0.83	-1.0
4,700,352	-				+0.4
4,700,352	-				-0.1
4,700,506	-				-0.2
4,700,512	+				+0.0
4,700,512	+				-0.5
4,700,512	+				-0.1
4,700,512	+				-0.4
4,700,516	+				+1.6
4,700,516	+				+0.6
4,700,517	-				-0.2
4,700,517	-				-0.7
4,700,517	-				+0.0
4,700,517	-				-0.1
4,700,993	-		Xcc-8004.4947.1	0.46	+1.0
4,701,037	+		Xcc-8004.4947.1	0.51	-1.0
4,701,037	+		Xcc-8004.4947.1	0.51	-1.6
4,701,038	-		Xcc-8004.4947.1	0.52	-1.1