Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4756.1 and Xcc-8004.4757.1 are separated by 50 nucleotides Xcc-8004.4757.1 and Xcc-8004.4758.1 are separated by 104 nucleotides Xcc-8004.4758.1 and Xcc-8004.4759.1 are separated by 69 nucleotides
Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486
Xcc-8004.4756.1
Xcc-8004.4757.1: Xcc-8004.4757.1 - Short-chain dehydrogenase/reductase SDR, at 4,526,537 to 4,527,313
Xcc-8004.4757.1
Xcc-8004.4758.1: Xcc-8004.4758.1 - FIG01211401: hypothetical protein, at 4,527,418 to 4,527,633
Xcc-8004.4758.1
Xcc-8004.4759.1: Xcc-8004.4759.1 - protease IV, at 4,527,703 to 4,529,604
Xcc-8004.4759.1
Position (kb) 4526
4527
4528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.999 kb on + strand, within Xcc-8004.4756.1 at 4525.999 kb on + strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.346 kb on - strand, within Xcc-8004.4756.1 at 4526.346 kb on - strand, within Xcc-8004.4756.1 at 4526.347 kb on + strand, within Xcc-8004.4756.1 at 4526.348 kb on - strand, within Xcc-8004.4756.1 at 4526.348 kb on - strand, within Xcc-8004.4756.1 at 4526.386 kb on + strand at 4526.538 kb on + strand at 4526.538 kb on + strand at 4527.385 kb on + strand at 4527.385 kb on + strand at 4527.385 kb on + strand at 4527.386 kb on - strand at 4527.438 kb on - strand at 4527.722 kb on + strand at 4527.722 kb on + strand at 4527.723 kb on - strand at 4527.723 kb on - strand at 4527.927 kb on - strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.125 kb on - strand, within Xcc-8004.4759.1 at 4528.125 kb on - strand, within Xcc-8004.4759.1 at 4528.227 kb on + strand, within Xcc-8004.4759.1 at 4528.228 kb on - strand, within Xcc-8004.4759.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,525,822 + Xcc-8004.4756.1 0.51 +0.4 4,525,822 + Xcc-8004.4756.1 0.51 +0.4 4,525,822 + Xcc-8004.4756.1 0.51 +0.6 4,525,822 + Xcc-8004.4756.1 0.51 -0.6 4,525,822 + Xcc-8004.4756.1 0.51 +0.5 4,525,822 + Xcc-8004.4756.1 0.51 -0.3 4,525,823 - Xcc-8004.4756.1 0.51 -2.5 4,525,823 - Xcc-8004.4756.1 0.51 +0.0 4,525,823 - Xcc-8004.4756.1 0.51 +0.4 4,525,823 - Xcc-8004.4756.1 0.51 -0.5 4,525,823 - Xcc-8004.4756.1 0.51 -0.3 4,525,823 - Xcc-8004.4756.1 0.51 -1.1 4,525,999 + Xcc-8004.4756.1 0.64 -0.8 4,525,999 + Xcc-8004.4756.1 0.64 +1.2 4,526,000 - Xcc-8004.4756.1 0.64 -0.2 4,526,000 - Xcc-8004.4756.1 0.64 -0.4 4,526,000 - Xcc-8004.4756.1 0.64 +0.0 4,526,047 + Xcc-8004.4756.1 0.68 -0.8 4,526,047 + Xcc-8004.4756.1 0.68 -0.4 4,526,047 + Xcc-8004.4756.1 0.68 -0.4 4,526,048 - Xcc-8004.4756.1 0.68 +0.3 4,526,048 - Xcc-8004.4756.1 0.68 -1.6 4,526,048 - Xcc-8004.4756.1 0.68 -0.0 4,526,048 - Xcc-8004.4756.1 0.68 -0.1 4,526,048 - Xcc-8004.4756.1 0.68 -1.1 4,526,345 + Xcc-8004.4756.1 0.90 +1.0 4,526,345 + Xcc-8004.4756.1 0.90 -0.6 4,526,345 + Xcc-8004.4756.1 0.90 -0.6 4,526,345 + Xcc-8004.4756.1 0.90 +1.6 4,526,345 + Xcc-8004.4756.1 0.90 +0.7 4,526,345 + Xcc-8004.4756.1 0.90 -0.4 4,526,346 - Xcc-8004.4756.1 0.90 -2.2 4,526,346 - Xcc-8004.4756.1 0.90 -2.2 4,526,347 + Xcc-8004.4756.1 0.90 +0.8 4,526,348 - Xcc-8004.4756.1 0.90 +0.9 4,526,348 - Xcc-8004.4756.1 0.90 +0.5 4,526,386 + +0.6 4,526,538 + -1.3 4,526,538 + -0.3 4,527,385 + -0.6 4,527,385 + -1.0 4,527,385 + -0.5 4,527,386 - +0.7 4,527,438 - -0.1 4,527,722 + +0.4 4,527,722 + -3.4 4,527,723 - -1.6 4,527,723 - -0.2 4,527,927 - Xcc-8004.4759.1 0.12 +0.6 4,528,124 + Xcc-8004.4759.1 0.22 -3.1 4,528,124 + Xcc-8004.4759.1 0.22 +0.5 4,528,124 + Xcc-8004.4759.1 0.22 -1.3 4,528,124 + Xcc-8004.4759.1 0.22 -1.4 4,528,124 + Xcc-8004.4759.1 0.22 -0.7 4,528,125 - Xcc-8004.4759.1 0.22 -2.4 4,528,125 - Xcc-8004.4759.1 0.22 -0.4 4,528,227 + Xcc-8004.4759.1 0.28 -0.6 4,528,228 - Xcc-8004.4759.1 0.28 -1.2
Or see this region's nucleotide sequence