Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4747.1 and Xcc-8004.4748.1 are separated by 40 nucleotides Xcc-8004.4748.1 and Xcc-8004.4750.1 are separated by 26 nucleotides Xcc-8004.4750.1 and Xcc-8004.4752.1 are separated by 180 nucleotides
Xcc-8004.4747.1: Xcc-8004.4747.1 - Protein of unknown function Smg, at 4,517,920 to 4,518,393
Xcc-8004.4747.1
Xcc-8004.4748.1: Xcc-8004.4748.1 - fimbrial protein, at 4,518,434 to 4,519,174
Xcc-8004.4748.1
Xcc-8004.4750.1: Xcc-8004.4750.1 - FIG01210152: hypothetical protein, at 4,519,201 to 4,520,346
Xcc-8004.4750.1
Xcc-8004.4752.1: Xcc-8004.4752.1 - DNA topoisomerase I (EC 5.99.1.2), at 4,520,527 to 4,523,022
Xcc-8004.4752.1
Position (kb) 4519
4520
4521 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.386 kb on + strand at 4518.386 kb on + strand at 4518.387 kb on - strand at 4518.387 kb on - strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.450 kb on - strand at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.722 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.891 kb on + strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.974 kb on + strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4519.173 kb on - strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.217 kb on - strand at 4519.217 kb on - strand at 4519.605 kb on + strand, within Xcc-8004.4750.1 at 4519.606 kb on - strand, within Xcc-8004.4750.1 at 4519.747 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.924 kb on + strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.954 kb on + strand, within Xcc-8004.4750.1 at 4519.954 kb on + strand, within Xcc-8004.4750.1 at 4519.955 kb on - strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.209 kb on + strand, within Xcc-8004.4750.1 at 4520.209 kb on + strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.275 kb on + strand at 4520.275 kb on + strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.396 kb on + strand at 4520.396 kb on + strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.399 kb on + strand at 4520.400 kb on - strand at 4520.400 kb on - strand at 4520.479 kb on + strand at 4520.479 kb on + strand at 4520.479 kb on + strand at 4520.489 kb on + strand at 4520.489 kb on + strand at 4520.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,518,340 + Xcc-8004.4747.1 0.89 -0.1 4,518,340 + Xcc-8004.4747.1 0.89 +0.5 4,518,341 - Xcc-8004.4747.1 0.89 +0.0 4,518,341 - Xcc-8004.4747.1 0.89 -0.6 4,518,341 - Xcc-8004.4747.1 0.89 +0.8 4,518,341 - Xcc-8004.4747.1 0.89 -1.4 4,518,386 + -0.9 4,518,386 + +1.2 4,518,387 - -0.1 4,518,387 - +1.8 4,518,446 + -2.7 4,518,446 + -0.2 4,518,446 + +0.5 4,518,446 + -0.1 4,518,446 + +0.0 4,518,446 + -0.1 4,518,446 + -0.3 4,518,446 + +0.4 4,518,446 + -0.9 4,518,447 - -1.9 4,518,447 - -1.7 4,518,447 - +0.4 4,518,447 - +0.3 4,518,447 - +0.7 4,518,447 - +0.1 4,518,447 - +0.4 4,518,447 - -0.6 4,518,447 - +0.3 4,518,447 - -0.2 4,518,447 - -0.1 4,518,447 - -0.8 4,518,447 - -1.3 4,518,447 - +1.2 4,518,449 + +1.0 4,518,449 + -0.3 4,518,449 + -0.1 4,518,449 + +0.3 4,518,449 + -0.6 4,518,449 + -0.8 4,518,450 - +0.3 4,518,509 + Xcc-8004.4748.1 0.10 -0.6 4,518,509 + Xcc-8004.4748.1 0.10 -0.2 4,518,510 - Xcc-8004.4748.1 0.10 +0.3 4,518,510 - Xcc-8004.4748.1 0.10 +1.0 4,518,556 + Xcc-8004.4748.1 0.16 +0.2 4,518,556 + Xcc-8004.4748.1 0.16 +0.1 4,518,556 + Xcc-8004.4748.1 0.16 +0.3 4,518,556 + Xcc-8004.4748.1 0.16 +0.4 4,518,556 + Xcc-8004.4748.1 0.16 +0.4 4,518,556 + Xcc-8004.4748.1 0.16 -1.2 4,518,556 + Xcc-8004.4748.1 0.16 -0.1 4,518,556 + Xcc-8004.4748.1 0.16 +0.6 4,518,556 + Xcc-8004.4748.1 0.16 -0.8 4,518,556 + Xcc-8004.4748.1 0.16 +0.5 4,518,557 - Xcc-8004.4748.1 0.17 -0.1 4,518,557 - Xcc-8004.4748.1 0.17 -0.7 4,518,557 - Xcc-8004.4748.1 0.17 -1.4 4,518,557 - Xcc-8004.4748.1 0.17 -0.5 4,518,557 - Xcc-8004.4748.1 0.17 +0.8 4,518,557 - Xcc-8004.4748.1 0.17 -0.3 4,518,557 - Xcc-8004.4748.1 0.17 +0.2 4,518,721 + Xcc-8004.4748.1 0.39 -1.2 4,518,721 + Xcc-8004.4748.1 0.39 +1.2 4,518,722 - Xcc-8004.4748.1 0.39 -0.6 4,518,834 - Xcc-8004.4748.1 0.54 -1.0 4,518,834 - Xcc-8004.4748.1 0.54 -0.0 4,518,834 - Xcc-8004.4748.1 0.54 -0.9 4,518,842 + Xcc-8004.4748.1 0.55 -1.4 4,518,842 + Xcc-8004.4748.1 0.55 +1.5 4,518,842 + Xcc-8004.4748.1 0.55 +1.8 4,518,842 + Xcc-8004.4748.1 0.55 -1.6 4,518,843 - Xcc-8004.4748.1 0.55 +0.5 4,518,843 - Xcc-8004.4748.1 0.55 +1.3 4,518,843 - Xcc-8004.4748.1 0.55 +1.0 4,518,843 - Xcc-8004.4748.1 0.55 +1.0 4,518,843 - Xcc-8004.4748.1 0.55 +1.8 4,518,891 + Xcc-8004.4748.1 0.62 -0.5 4,518,892 - Xcc-8004.4748.1 0.62 +0.6 4,518,892 - Xcc-8004.4748.1 0.62 -0.0 4,518,974 + Xcc-8004.4748.1 0.73 +0.8 4,518,975 - Xcc-8004.4748.1 0.73 -0.5 4,518,975 - Xcc-8004.4748.1 0.73 -0.9 4,519,173 - -0.1 4,519,200 + +0.3 4,519,200 + -0.2 4,519,200 + +0.1 4,519,200 + +1.0 4,519,200 + -0.7 4,519,200 + +0.6 4,519,200 + -0.4 4,519,200 + -0.2 4,519,201 - +0.3 4,519,201 - -0.5 4,519,201 - -0.6 4,519,201 - -1.7 4,519,201 - -0.2 4,519,201 - +0.5 4,519,201 - +0.6 4,519,201 - -0.1 4,519,213 + -0.9 4,519,213 + +1.7 4,519,213 + -0.9 4,519,213 + +1.9 4,519,213 + +0.9 4,519,213 + -1.3 4,519,213 + -0.5 4,519,213 + -1.2 4,519,214 - +0.6 4,519,214 - -0.3 4,519,214 - -1.4 4,519,214 - +0.3 4,519,214 - +0.1 4,519,214 - +0.6 4,519,214 - -1.8 4,519,214 - +0.3 4,519,216 + -1.7 4,519,216 + -1.2 4,519,216 + +0.2 4,519,216 + +0.6 4,519,216 + +1.0 4,519,216 + +0.4 4,519,216 + +0.7 4,519,217 - -1.3 4,519,217 - -0.5 4,519,605 + Xcc-8004.4750.1 0.35 -1.6 4,519,606 - Xcc-8004.4750.1 0.35 +0.0 4,519,747 + Xcc-8004.4750.1 0.48 +2.6 4,519,813 + Xcc-8004.4750.1 0.53 -0.4 4,519,813 + Xcc-8004.4750.1 0.53 +1.3 4,519,813 + Xcc-8004.4750.1 0.53 -0.5 4,519,814 - Xcc-8004.4750.1 0.53 +1.0 4,519,814 - Xcc-8004.4750.1 0.53 -0.3 4,519,814 - Xcc-8004.4750.1 0.53 +1.0 4,519,814 - Xcc-8004.4750.1 0.53 +0.7 4,519,814 - Xcc-8004.4750.1 0.53 +0.9 4,519,814 - Xcc-8004.4750.1 0.53 +0.1 4,519,814 - Xcc-8004.4750.1 0.53 -0.9 4,519,924 + Xcc-8004.4750.1 0.63 -1.7 4,519,925 - Xcc-8004.4750.1 0.63 +0.4 4,519,925 - Xcc-8004.4750.1 0.63 -0.1 4,519,925 - Xcc-8004.4750.1 0.63 -0.8 4,519,954 + Xcc-8004.4750.1 0.66 -0.2 4,519,954 + Xcc-8004.4750.1 0.66 +1.8 4,519,955 - Xcc-8004.4750.1 0.66 -1.4 4,520,080 + Xcc-8004.4750.1 0.77 -2.1 4,520,080 + Xcc-8004.4750.1 0.77 -0.4 4,520,080 + Xcc-8004.4750.1 0.77 -1.7 4,520,080 + Xcc-8004.4750.1 0.77 -0.9 4,520,080 + Xcc-8004.4750.1 0.77 -0.5 4,520,080 + Xcc-8004.4750.1 0.77 -2.6 4,520,080 + Xcc-8004.4750.1 0.77 -1.6 4,520,080 + Xcc-8004.4750.1 0.77 -0.7 4,520,080 + Xcc-8004.4750.1 0.77 -1.7 4,520,080 + Xcc-8004.4750.1 0.77 +0.1 4,520,080 + Xcc-8004.4750.1 0.77 -0.4 4,520,080 + Xcc-8004.4750.1 0.77 +0.6 4,520,080 + Xcc-8004.4750.1 0.77 -0.3 4,520,080 + Xcc-8004.4750.1 0.77 -1.3 4,520,080 + Xcc-8004.4750.1 0.77 +0.6 4,520,081 - Xcc-8004.4750.1 0.77 +0.5 4,520,081 - Xcc-8004.4750.1 0.77 -0.6 4,520,081 - Xcc-8004.4750.1 0.77 +1.0 4,520,081 - Xcc-8004.4750.1 0.77 -1.4 4,520,081 - Xcc-8004.4750.1 0.77 -1.4 4,520,081 - Xcc-8004.4750.1 0.77 +0.1 4,520,081 - Xcc-8004.4750.1 0.77 +0.0 4,520,081 - Xcc-8004.4750.1 0.77 +0.1 4,520,081 - Xcc-8004.4750.1 0.77 -0.1 4,520,081 - Xcc-8004.4750.1 0.77 -0.9 4,520,081 - Xcc-8004.4750.1 0.77 +0.2 4,520,081 - Xcc-8004.4750.1 0.77 +0.8 4,520,209 + Xcc-8004.4750.1 0.88 +0.3 4,520,209 + Xcc-8004.4750.1 0.88 -0.5 4,520,210 - Xcc-8004.4750.1 0.88 -0.0 4,520,210 - Xcc-8004.4750.1 0.88 +3.0 4,520,210 - Xcc-8004.4750.1 0.88 +1.5 4,520,210 - Xcc-8004.4750.1 0.88 +0.5 4,520,210 - Xcc-8004.4750.1 0.88 -1.1 4,520,275 + +0.4 4,520,275 + -0.6 4,520,276 - +0.0 4,520,276 - +0.7 4,520,276 - -0.5 4,520,276 - -1.7 4,520,276 - -0.2 4,520,276 - -0.3 4,520,276 - +1.0 4,520,276 - -0.0 4,520,276 - +0.6 4,520,276 - -1.9 4,520,276 - +0.8 4,520,396 + +0.8 4,520,396 + +1.2 4,520,397 - -0.4 4,520,397 - +0.4 4,520,397 - -1.6 4,520,397 - -0.0 4,520,397 - +0.5 4,520,397 - -0.1 4,520,399 + -0.4 4,520,400 - +0.2 4,520,400 - -0.0 4,520,479 + -0.2 4,520,479 + -0.4 4,520,479 + -0.2 4,520,489 + -0.2 4,520,489 + -1.3 4,520,489 + +1.6
Or see this region's nucleotide sequence