Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4407.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,214,783	+				+0.7
4,214,783	+				+1.4
4,214,784	-				+0.5
4,214,784	-				+0.8
4,214,838	+		Xcc-8004.4406.1	0.20	+2.4
4,214,839	-		Xcc-8004.4406.1	0.20	+0.3
4,214,839	-		Xcc-8004.4406.1	0.20	-0.6
4,214,862	+		Xcc-8004.4406.1	0.25	+0.9
4,214,863	-		Xcc-8004.4406.1	0.25	-0.0
4,214,863	-		Xcc-8004.4406.1	0.25	-0.3
4,214,863	-		Xcc-8004.4406.1	0.25	-0.8
4,214,863	-		Xcc-8004.4406.1	0.25	-2.7
4,214,946	+		Xcc-8004.4406.1	0.45	-1.4
4,214,946	+		Xcc-8004.4406.1	0.45	-0.1
4,214,946	+		Xcc-8004.4406.1	0.45	+0.0
4,214,947	-		Xcc-8004.4406.1	0.45	+0.1
4,214,947	-		Xcc-8004.4406.1	0.45	+0.1
4,214,947	-		Xcc-8004.4406.1	0.45	+0.3
4,214,947	-		Xcc-8004.4406.1	0.45	+0.7
4,214,976	+		Xcc-8004.4406.1	0.52	-0.8
4,214,977	-		Xcc-8004.4406.1	0.52	-0.1
4,214,989	+		Xcc-8004.4406.1	0.55	+2.4
4,214,991	+		Xcc-8004.4406.1	0.55	+0.5
4,214,992	-		Xcc-8004.4406.1	0.55	+0.2
4,215,036	+		Xcc-8004.4406.1	0.66	-1.2
4,215,037	-		Xcc-8004.4406.1	0.66	+1.4
4,215,073	-		Xcc-8004.4406.1	0.74	+0.0
4,215,186	+				-0.2
4,215,186	+				+0.6
4,215,186	+				+0.8
4,215,186	+				+1.6
4,215,186	+				+0.4
4,215,187	-				+0.5
4,215,187	-				+0.7
4,215,187	-				-2.1
4,215,187	-				-0.2
4,215,187	-				+0.7
4,215,187	-				-0.8
4,215,187	-				-1.2
4,215,187	-				+0.5
4,215,204	+				-0.2
4,215,205	-				-0.4
4,215,205	-				+0.5
4,215,205	-				-0.6
4,215,205	-				+0.2
4,215,205	-				+0.4
4,215,219	+				-0.4
4,215,220	-				+0.2
4,215,220	-				+0.1
4,215,220	-				-0.5
4,215,239	-				-0.4
4,215,539	+				-0.3
4,215,611	-				+0.2
4,215,620	-				-0.3
4,215,790	+		Xcc-8004.4407.1	0.20	-1.1
4,215,790	+		Xcc-8004.4407.1	0.20	-0.0
4,215,791	-		Xcc-8004.4407.1	0.20	+0.6
4,215,949	+		Xcc-8004.4407.1	0.33	-0.6
4,215,949	+		Xcc-8004.4407.1	0.33	-0.6
4,215,949	+		Xcc-8004.4407.1	0.33	+0.3
4,215,949	+		Xcc-8004.4407.1	0.33	-0.5
4,216,099	+		Xcc-8004.4407.1	0.46	+0.2
4,216,099	+		Xcc-8004.4407.1	0.46	-1.6
4,216,100	-		Xcc-8004.4407.1	0.46	-0.9
4,216,100	-		Xcc-8004.4407.1	0.46	-0.3
4,216,157	+		Xcc-8004.4407.1	0.51	+0.5
4,216,157	+		Xcc-8004.4407.1	0.51	-1.8
4,216,157	+		Xcc-8004.4407.1	0.51	+0.4
4,216,158	-		Xcc-8004.4407.1	0.51	+0.1
4,216,203	+		Xcc-8004.4407.1	0.55	+0.6
4,216,293	+		Xcc-8004.4407.1	0.62	-0.6
4,216,293	+		Xcc-8004.4407.1	0.62	-1.0
4,216,294	-		Xcc-8004.4407.1	0.62	-0.3
4,216,471	+		Xcc-8004.4407.1	0.77	+1.6
4,216,472	-		Xcc-8004.4407.1	0.77	+0.2
4,216,472	-		Xcc-8004.4407.1	0.77	-0.1
4,216,544	-		Xcc-8004.4407.1	0.83	+0.1
4,216,544	-		Xcc-8004.4407.1	0.83	+0.2
4,216,711	+				+0.1
4,216,854	+				+0.4
4,216,897	+				-1.1
4,216,897	+				+0.1
4,216,972	+				+0.1
4,216,973	-				-0.2
4,217,060	-				+0.8
4,217,129	+				+0.4
4,217,129	+				-0.0
4,217,167	-				+0.2
4,217,201	+				-0.6
4,217,258	+				+2.0
4,217,258	+				-1.2
4,217,311	+				-0.0
4,217,311	+				-1.4
4,217,315	-				-0.4
4,217,315	-				+1.0
4,217,315	-				-0.4
4,217,315	-				-1.9
4,217,324	+				+1.0
4,217,405	+				+0.1
4,217,405	+				-0.6
4,217,405	+				+0.0
4,217,406	-				+0.0
4,217,491	-		Xcc-8004.4409.1	0.17	+0.8