Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3947.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3946.1 and Xcc-8004.3947.1 are separated by 23 nucleotidesXcc-8004.3947.1 and Xcc-8004.3948.1 are separated by 187 nucleotides Xcc-8004.3946.1: Xcc-8004.3946.1 - FIG01212930: hypothetical protein, at 3,820,350 to 3,822,017 Xcc-8004.3946.1 Xcc-8004.3947.1: Xcc-8004.3947.1 - FIG01210742: hypothetical protein, at 3,822,041 to 3,823,114 Xcc-8004.3947.1 Xcc-8004.3948.1: Xcc-8004.3948.1 - FIG01211207: hypothetical protein, at 3,823,302 to 3,824,162 Xcc-8004.3948.1 Position (kb) 3822 3823 3824Strain fitness (log2 ratio) -2 -1 0 1at 3821.123 kb on + strand, within Xcc-8004.3946.1at 3821.123 kb on + strand, within Xcc-8004.3946.1at 3821.133 kb on + strand, within Xcc-8004.3946.1at 3821.175 kb on + strand, within Xcc-8004.3946.1at 3821.358 kb on + strand, within Xcc-8004.3946.1at 3821.453 kb on + strand, within Xcc-8004.3946.1at 3821.503 kb on + strand, within Xcc-8004.3946.1at 3821.503 kb on + strand, within Xcc-8004.3946.1at 3821.628 kb on + strand, within Xcc-8004.3946.1at 3821.629 kb on - strand, within Xcc-8004.3946.1at 3821.710 kb on + strand, within Xcc-8004.3946.1at 3821.711 kb on - strand, within Xcc-8004.3946.1at 3821.757 kb on + strand, within Xcc-8004.3946.1at 3821.769 kb on - strand, within Xcc-8004.3946.1at 3822.130 kb on + strandat 3822.278 kb on + strand, within Xcc-8004.3947.1at 3822.278 kb on + strand, within Xcc-8004.3947.1at 3822.278 kb on + strand, within Xcc-8004.3947.1at 3822.591 kb on + strand, within Xcc-8004.3947.1at 3822.674 kb on + strand, within Xcc-8004.3947.1at 3822.675 kb on - strand, within Xcc-8004.3947.1at 3822.713 kb on + strand, within Xcc-8004.3947.1at 3822.714 kb on - strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.853 kb on + strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3822.854 kb on - strand, within Xcc-8004.3947.1at 3823.109 kb on - strandat 3823.142 kb on + strandat 3823.143 kb on - strandat 3823.246 kb on + strandat 3823.246 kb on + strandat 3823.453 kb on + strand, within Xcc-8004.3948.1at 3823.453 kb on + strand, within Xcc-8004.3948.1at 3823.454 kb on - strand, within Xcc-8004.3948.1at 3823.494 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.859 kb on + strand, within Xcc-8004.3948.1at 3823.860 kb on - strand, within Xcc-8004.3948.1at 3823.860 kb on - strand, within Xcc-8004.3948.1at 3823.982 kb on - strand, within Xcc-8004.3948.1at 3823.983 kb on - strand, within Xcc-8004.3948.1at 3824.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,821,123 + Xcc-8004.3946.1 0.46 +1.0
3,821,123 + Xcc-8004.3946.1 0.46 -0.8
3,821,133 + Xcc-8004.3946.1 0.47 -1.6
3,821,175 + Xcc-8004.3946.1 0.49 -2.1
3,821,358 + Xcc-8004.3946.1 0.60 -1.0
3,821,453 + Xcc-8004.3946.1 0.66 -2.2
3,821,503 + Xcc-8004.3946.1 0.69 +1.4
3,821,503 + Xcc-8004.3946.1 0.69 +0.6
3,821,628 + Xcc-8004.3946.1 0.77 +0.7
3,821,629 - Xcc-8004.3946.1 0.77 +1.0
3,821,710 + Xcc-8004.3946.1 0.82 +0.2
3,821,711 - Xcc-8004.3946.1 0.82 +0.9
3,821,757 + Xcc-8004.3946.1 0.84 -0.3
3,821,769 - Xcc-8004.3946.1 0.85 +0.3
3,822,130 + +0.8
3,822,278 + Xcc-8004.3947.1 0.22 +0.0
3,822,278 + Xcc-8004.3947.1 0.22 +0.3
3,822,278 + Xcc-8004.3947.1 0.22 +1.6
3,822,591 + Xcc-8004.3947.1 0.51 +1.6
3,822,674 + Xcc-8004.3947.1 0.59 +0.4
3,822,675 - Xcc-8004.3947.1 0.59 -1.3
3,822,713 + Xcc-8004.3947.1 0.63 +0.0
3,822,714 - Xcc-8004.3947.1 0.63 +1.4
3,822,853 + Xcc-8004.3947.1 0.76 +0.0
3,822,853 + Xcc-8004.3947.1 0.76 -0.2
3,822,853 + Xcc-8004.3947.1 0.76 +1.2
3,822,853 + Xcc-8004.3947.1 0.76 +0.2
3,822,853 + Xcc-8004.3947.1 0.76 +1.5
3,822,854 - Xcc-8004.3947.1 0.76 -0.4
3,822,854 - Xcc-8004.3947.1 0.76 +0.4
3,822,854 - Xcc-8004.3947.1 0.76 +0.2
3,823,109 - -1.8
3,823,142 + +0.1
3,823,143 - +0.1
3,823,246 + -0.3
3,823,246 + -0.9
3,823,453 + Xcc-8004.3948.1 0.18 -1.0
3,823,453 + Xcc-8004.3948.1 0.18 -0.5
3,823,454 - Xcc-8004.3948.1 0.18 +0.3
3,823,494 + Xcc-8004.3948.1 0.22 -0.3
3,823,859 + Xcc-8004.3948.1 0.65 -2.3
3,823,859 + Xcc-8004.3948.1 0.65 +0.1
3,823,859 + Xcc-8004.3948.1 0.65 -2.5
3,823,860 - Xcc-8004.3948.1 0.65 -1.7
3,823,860 - Xcc-8004.3948.1 0.65 +0.2
3,823,982 - Xcc-8004.3948.1 0.79 +0.2
3,823,983 - Xcc-8004.3948.1 0.79 +1.0
3,824,109 - +0.6

Or see this region's nucleotide sequence