Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3920.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,793,546	+				+0.1
3,793,546	+				+1.4
3,793,546	+				-0.5
3,793,546	+				-1.1
3,793,546	+				-1.4
3,793,547	-				-0.1
3,793,581	+				-0.2
3,793,581	+				-0.4
3,793,581	+				-0.1
3,793,581	+				-0.5
3,793,581	+				+0.3
3,793,581	+				-0.6
3,793,582	-				-0.4
3,793,582	-				-1.4
3,793,582	-				+0.2
3,793,582	-				+0.9
3,793,582	-				+0.6
3,793,942	+		Xcc-8004.3919.1	0.52	-1.6
3,793,966	+		Xcc-8004.3919.1	0.56	-0.7
3,793,966	+		Xcc-8004.3919.1	0.56	-0.1
3,793,967	-		Xcc-8004.3919.1	0.56	-0.0
3,793,967	-		Xcc-8004.3919.1	0.56	-0.0
3,793,967	-		Xcc-8004.3919.1	0.56	+0.2
3,793,967	-		Xcc-8004.3919.1	0.56	+0.5
3,793,967	-		Xcc-8004.3919.1	0.56	+1.4
3,793,967	-		Xcc-8004.3919.1	0.56	+1.3
3,794,086	+		Xcc-8004.3919.1	0.75	+1.4
3,794,086	+		Xcc-8004.3919.1	0.75	-1.3
3,794,087	-		Xcc-8004.3919.1	0.75	-0.4
3,794,180	-		Xcc-8004.3919.1	0.89	+0.6
3,794,231	+				-0.3
3,794,231	+				-1.0
3,794,231	+				+1.8
3,794,232	-				-0.8
3,794,232	-				-2.0
3,794,350	-				-1.1
3,794,401	+				+0.2
3,794,401	+				-0.3
3,794,402	-				-1.1
3,794,402	-				-0.8
3,794,402	-				-1.0
3,794,402	-				+1.2
3,794,827	+		Xcc-8004.3920.1	0.41	-0.2
3,794,883	+		Xcc-8004.3920.1	0.47	+0.3
3,794,883	+		Xcc-8004.3920.1	0.47	+1.0
3,794,884	-		Xcc-8004.3920.1	0.47	+2.6
3,794,884	-		Xcc-8004.3920.1	0.47	+0.2
3,794,927	-		Xcc-8004.3920.1	0.51	-0.4
3,794,927	-		Xcc-8004.3920.1	0.51	-1.2
3,794,927	-		Xcc-8004.3920.1	0.51	-0.6
3,794,927	-		Xcc-8004.3920.1	0.51	+1.6
3,794,927	-		Xcc-8004.3920.1	0.51	+0.7
3,794,974	-		Xcc-8004.3920.1	0.56	-0.1
3,794,974	-		Xcc-8004.3920.1	0.56	-0.1
3,794,979	+		Xcc-8004.3920.1	0.57	+0.7
3,794,980	-		Xcc-8004.3920.1	0.57	+0.3
3,794,980	-		Xcc-8004.3920.1	0.57	-0.2
3,795,018	+		Xcc-8004.3920.1	0.61	+0.7
3,795,018	+		Xcc-8004.3920.1	0.61	+0.1
3,795,018	+		Xcc-8004.3920.1	0.61	-2.2
3,795,018	+		Xcc-8004.3920.1	0.61	+0.7
3,795,019	-		Xcc-8004.3920.1	0.61	-0.2
3,795,019	-		Xcc-8004.3920.1	0.61	-0.2
3,795,019	-		Xcc-8004.3920.1	0.61	-1.6
3,795,110	+		Xcc-8004.3920.1	0.70	+0.6
3,795,111	-		Xcc-8004.3920.1	0.70	-1.3
3,795,208	-		Xcc-8004.3920.1	0.80	+1.0
3,795,208	-		Xcc-8004.3920.1	0.80	+0.7
3,795,697	+				-1.0
3,795,697	+				+0.9
3,795,697	+				+0.3
3,795,697	+				+1.3
3,795,697	+				+0.3
3,795,697	+				-0.3
3,795,698	-				-3.4
3,795,698	-				-1.4
3,795,698	-				+0.8
3,795,776	+				-1.0
3,795,777	-				-1.6
3,795,803	-		Xcc-8004.3921.1	0.11	-0.6
3,795,833	-		Xcc-8004.3921.1	0.12	-0.2
3,795,871	+		Xcc-8004.3921.1	0.14	-0.5
3,795,871	+		Xcc-8004.3921.1	0.14	-1.2
3,795,941	+		Xcc-8004.3921.1	0.17	+0.6
3,795,986	+		Xcc-8004.3921.1	0.19	-0.4
3,795,986	+		Xcc-8004.3921.1	0.19	-0.1
3,795,987	-		Xcc-8004.3921.1	0.19	+0.6
3,795,989	+		Xcc-8004.3921.1	0.19	+0.2
3,795,990	-		Xcc-8004.3921.1	0.19	-1.4
3,796,118	+		Xcc-8004.3921.1	0.24	-0.2
3,796,119	-		Xcc-8004.3921.1	0.24	+0.1
3,796,119	-		Xcc-8004.3921.1	0.24	-0.7
3,796,223	+		Xcc-8004.3921.1	0.29	-2.2
3,796,224	-		Xcc-8004.3921.1	0.29	+0.1
3,796,224	-		Xcc-8004.3921.1	0.29	+0.0
3,796,292	+		Xcc-8004.3921.1	0.32	-0.6
3,796,293	-		Xcc-8004.3921.1	0.32	+0.2
3,796,293	-		Xcc-8004.3921.1	0.32	+1.2