Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3737.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,612,026	+				-0.3
3,612,027	-				+0.5
3,612,029	-				+0.5
3,612,029	-				+0.7
3,612,029	-				+1.3
3,612,029	-				-1.3
3,612,034	-				-1.1
3,612,249	+		Xcc-8004.3737.1	0.31	+0.0
3,612,249	+		Xcc-8004.3737.1	0.31	-0.3
3,612,333	+		Xcc-8004.3737.1	0.40	-0.5
3,612,422	-		Xcc-8004.3737.1	0.49	-0.9
3,612,422	-		Xcc-8004.3737.1	0.49	+1.0
3,612,600	+		Xcc-8004.3737.1	0.68	+0.2
3,612,620	-		Xcc-8004.3737.1	0.70	+0.7
3,612,726	+		Xcc-8004.3737.1	0.81	-0.8
3,612,810	-				+0.8
3,612,842	+				+0.4
3,612,951	-		Xcc-8004.3738.1	0.15	+0.4
3,613,215	+				+0.5
3,613,236	+				+0.4
3,613,236	+				+0.5
3,613,240	+				-0.8
3,613,240	+				-1.6
3,613,240	+				-0.1
3,613,241	-				+0.5
3,613,241	-				-0.6
3,613,241	-				-0.1
3,613,241	-				-0.6
3,613,242	+				-1.2
3,613,248	-				-0.9
3,613,362	+		Xcc-8004.3739.1	0.44	-0.1
3,613,363	-		Xcc-8004.3739.1	0.44	+0.5
3,613,363	-		Xcc-8004.3739.1	0.44	-0.2
3,613,383	+		Xcc-8004.3739.1	0.51	-2.1
3,613,383	+		Xcc-8004.3739.1	0.51	+0.6
3,613,384	-		Xcc-8004.3739.1	0.52	-0.4
3,613,384	-		Xcc-8004.3739.1	0.52	-1.1
3,613,418	-		Xcc-8004.3739.1	0.64	-0.1
3,613,418	-		Xcc-8004.3739.1	0.64	+0.8
3,613,563	+				-0.9
3,613,685	+		Xcc-8004.3740.1	0.24	-0.7
3,613,752	-		Xcc-8004.3740.1	0.37	-0.7
3,613,755	+		Xcc-8004.3740.1	0.38	+0.6
3,613,756	-		Xcc-8004.3740.1	0.38	+0.5
3,613,756	-		Xcc-8004.3740.1	0.38	-0.7
3,613,766	+		Xcc-8004.3740.1	0.40	+0.5
3,613,773	+		Xcc-8004.3740.1	0.42	-0.8
3,613,774	-		Xcc-8004.3740.1	0.42	-0.5
3,613,836	-		Xcc-8004.3740.1	0.55	+0.5
3,613,893	+		Xcc-8004.3740.1	0.67	-1.7