Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.367.1 and Xcc-8004.368.1 are separated by 8 nucleotides Xcc-8004.368.1 and Xcc-8004.369.1 are separated by 6 nucleotides Xcc-8004.369.1 and Xcc-8004.370.1 are separated by 19 nucleotides Xcc-8004.370.1 and Xcc-8004.371.1 are separated by 474 nucleotides Xcc-8004.371.1 and Xcc-8004.372.1 are separated by 427 nucleotides
Xcc-8004.367.1: Xcc-8004.367.1 - putative; ORF located using Glimmer/Genemark, at 351,589 to 351,954
Xcc-8004.367.1
Xcc-8004.368.1: Xcc-8004.368.1 - putative; ORF located using Glimmer/Genemark, at 351,963 to 352,130
Xcc-8004.368.1
Xcc-8004.369.1: Xcc-8004.369.1 - hypothetical protein, at 352,137 to 352,241
Xcc-8004.369.1
Xcc-8004.370.1: Xcc-8004.370.1 - hypothetical protein, at 352,261 to 352,422
Xcc-8004.370.1
Xcc-8004.371.1: Xcc-8004.371.1 - transcriptional regulator, at 352,897 to 354,093
Xcc-8004.371.1
Xcc-8004.372.1: Xcc-8004.372.1 - Endonuclease/Exonuclease/phosphatase family protein, at 354,521 to 355,282
Xcc-8004.372.1
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 351.900 kb on + strand, within Xcc-8004.367.1 at 351.965 kb on - strand at 352.087 kb on - strand, within Xcc-8004.368.1 at 352.582 kb on + strand at 352.582 kb on + strand at 352.582 kb on + strand at 352.583 kb on - strand at 352.644 kb on - strand at 352.669 kb on - strand at 352.669 kb on - strand at 352.689 kb on + strand at 352.690 kb on - strand at 352.757 kb on - strand at 352.851 kb on + strand at 353.139 kb on + strand, within Xcc-8004.371.1 at 353.139 kb on + strand, within Xcc-8004.371.1 at 353.354 kb on - strand, within Xcc-8004.371.1 at 353.398 kb on - strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.613 kb on + strand, within Xcc-8004.371.1 at 353.617 kb on + strand, within Xcc-8004.371.1 at 353.618 kb on - strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.714 kb on - strand, within Xcc-8004.371.1 at 353.714 kb on - strand, within Xcc-8004.371.1 at 354.138 kb on + strand at 354.146 kb on - strand at 354.171 kb on + strand at 354.171 kb on + strand at 354.172 kb on - strand at 354.220 kb on + strand at 354.221 kb on - strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.329 kb on - strand at 354.329 kb on - strand at 354.352 kb on + strand at 354.353 kb on - strand at 354.353 kb on - strand at 354.356 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.371 kb on + strand at 354.371 kb on + strand at 354.732 kb on - strand, within Xcc-8004.372.1 at 354.737 kb on + strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.770 kb on + strand, within Xcc-8004.372.1 at 354.888 kb on + strand, within Xcc-8004.372.1 at 354.889 kb on - strand, within Xcc-8004.372.1 at 354.930 kb on + strand, within Xcc-8004.372.1 at 354.931 kb on - strand, within Xcc-8004.372.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 351,900 + Xcc-8004.367.1 0.85 -1.2 351,965 - -0.6 352,087 - Xcc-8004.368.1 0.74 +1.3 352,582 + -2.6 352,582 + -1.3 352,582 + +1.0 352,583 - +0.9 352,644 - -0.2 352,669 - +1.1 352,669 - +1.0 352,689 + +1.0 352,690 - +0.9 352,757 - -0.4 352,851 + -1.6 353,139 + Xcc-8004.371.1 0.20 +0.9 353,139 + Xcc-8004.371.1 0.20 -0.8 353,354 - Xcc-8004.371.1 0.38 +1.7 353,398 - Xcc-8004.371.1 0.42 -0.9 353,401 + Xcc-8004.371.1 0.42 -1.0 353,401 + Xcc-8004.371.1 0.42 -0.0 353,401 + Xcc-8004.371.1 0.42 +0.1 353,401 + Xcc-8004.371.1 0.42 -1.7 353,401 + Xcc-8004.371.1 0.42 +0.1 353,402 - Xcc-8004.371.1 0.42 +0.1 353,402 - Xcc-8004.371.1 0.42 -1.3 353,402 - Xcc-8004.371.1 0.42 -0.4 353,402 - Xcc-8004.371.1 0.42 -0.3 353,402 - Xcc-8004.371.1 0.42 -0.6 353,613 + Xcc-8004.371.1 0.60 -0.6 353,617 + Xcc-8004.371.1 0.60 +0.4 353,618 - Xcc-8004.371.1 0.60 -1.0 353,657 + Xcc-8004.371.1 0.63 -0.7 353,657 + Xcc-8004.371.1 0.63 +0.3 353,657 + Xcc-8004.371.1 0.63 +2.0 353,657 + Xcc-8004.371.1 0.63 -0.9 353,658 - Xcc-8004.371.1 0.64 -0.2 353,658 - Xcc-8004.371.1 0.64 -0.1 353,658 - Xcc-8004.371.1 0.64 -0.9 353,658 - Xcc-8004.371.1 0.64 -1.9 353,713 + Xcc-8004.371.1 0.68 -0.2 353,713 + Xcc-8004.371.1 0.68 +0.9 353,713 + Xcc-8004.371.1 0.68 -0.4 353,713 + Xcc-8004.371.1 0.68 -0.3 353,713 + Xcc-8004.371.1 0.68 -0.1 353,713 + Xcc-8004.371.1 0.68 -0.8 353,713 + Xcc-8004.371.1 0.68 -1.3 353,714 - Xcc-8004.371.1 0.68 -0.1 353,714 - Xcc-8004.371.1 0.68 +0.2 354,138 + -0.7 354,146 - -2.2 354,171 + -2.4 354,171 + +1.0 354,172 - -0.1 354,220 + +3.9 354,221 - +0.3 354,328 + -0.3 354,328 + -0.2 354,328 + +0.8 354,328 + +0.4 354,329 - +0.0 354,329 - -1.4 354,352 + +0.2 354,353 - -0.1 354,353 - -1.1 354,356 + -0.2 354,356 + +0.6 354,357 - -0.2 354,371 + +0.6 354,371 + -0.1 354,732 - Xcc-8004.372.1 0.28 -0.5 354,737 + Xcc-8004.372.1 0.28 -0.4 354,738 - Xcc-8004.372.1 0.28 -0.5 354,738 - Xcc-8004.372.1 0.28 +0.2 354,770 + Xcc-8004.372.1 0.33 -1.0 354,888 + Xcc-8004.372.1 0.48 -0.4 354,889 - Xcc-8004.372.1 0.48 +0.5 354,930 + Xcc-8004.372.1 0.54 -2.8 354,931 - Xcc-8004.372.1 0.54 +0.5
Or see this region's nucleotide sequence