Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3669.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,547,536	+		Xcc-8004.3667.1	0.87	+0.7
3,547,536	+		Xcc-8004.3667.1	0.87	+0.3
3,547,536	+		Xcc-8004.3667.1	0.87	-0.0
3,547,536	+		Xcc-8004.3667.1	0.87	-0.1
3,547,536	+		Xcc-8004.3667.1	0.87	+0.8
3,547,536	+		Xcc-8004.3667.1	0.87	-0.3
3,547,537	-		Xcc-8004.3667.1	0.87	+0.5
3,547,537	-		Xcc-8004.3667.1	0.87	-0.2
3,547,538	+		Xcc-8004.3667.1	0.87	-2.3
3,547,538	+		Xcc-8004.3667.1	0.87	+0.7
3,547,538	+		Xcc-8004.3667.1	0.87	+0.7
3,547,538	+		Xcc-8004.3667.1	0.87	-0.0
3,547,539	-		Xcc-8004.3667.1	0.88	-0.8
3,547,539	-		Xcc-8004.3667.1	0.88	-0.5
3,547,539	-		Xcc-8004.3667.1	0.88	-1.9
3,547,539	-		Xcc-8004.3667.1	0.88	+0.3
3,547,636	+				-1.0
3,547,636	+				-0.3
3,547,636	+				+0.2
3,547,637	-				-1.5
3,547,637	-				-0.7
3,547,637	-				+1.9
3,547,637	-				-1.0
3,547,637	-				-2.2
3,547,666	+				-1.3
3,547,666	+				+0.7
3,547,666	+				-0.4
3,547,667	-				-0.8
3,547,686	+				-0.3
3,547,686	+				+0.1
3,547,686	+				+0.5
3,547,687	-				-0.1
3,547,687	-				+0.3
3,547,687	-				-0.6
3,547,687	-				-1.5
3,547,928	+		Xcc-8004.3668.1	0.32	+0.5
3,547,928	+		Xcc-8004.3668.1	0.32	+0.2
3,547,928	+		Xcc-8004.3668.1	0.32	-3.3
3,547,928	+		Xcc-8004.3668.1	0.32	+0.3
3,547,929	-		Xcc-8004.3668.1	0.33	-0.5
3,548,373	+				-0.8
3,548,390	+				-1.9
3,548,391	-				-0.9
3,548,391	-				+0.0
3,548,484	+				+1.2
3,548,484	+				+0.8
3,548,484	+				+1.4
3,548,485	-				+0.3
3,548,681	+		Xcc-8004.3669.1	0.11	-0.1
3,548,681	+		Xcc-8004.3669.1	0.11	+0.9
3,548,681	+		Xcc-8004.3669.1	0.11	-2.9
3,548,681	+		Xcc-8004.3669.1	0.11	+0.9
3,548,681	+		Xcc-8004.3669.1	0.11	+0.8
3,548,681	+		Xcc-8004.3669.1	0.11	+1.3
3,548,682	-		Xcc-8004.3669.1	0.11	+1.3
3,548,822	+		Xcc-8004.3669.1	0.21	+0.3
3,548,822	+		Xcc-8004.3669.1	0.21	+1.5
3,548,822	+		Xcc-8004.3669.1	0.21	-2.3
3,548,823	-		Xcc-8004.3669.1	0.21	+2.6
3,548,920	-		Xcc-8004.3669.1	0.29	-1.2
3,549,365	+		Xcc-8004.3669.1	0.62	-0.9
3,549,365	+		Xcc-8004.3669.1	0.62	-0.7
3,549,365	+		Xcc-8004.3669.1	0.62	-0.4
3,549,366	-		Xcc-8004.3669.1	0.62	-0.2
3,549,366	-		Xcc-8004.3669.1	0.62	-0.1
3,549,366	-		Xcc-8004.3669.1	0.62	+0.6
3,549,366	-		Xcc-8004.3669.1	0.62	-1.2
3,549,366	-		Xcc-8004.3669.1	0.62	-1.0
3,549,366	-		Xcc-8004.3669.1	0.62	+0.5
3,549,484	-		Xcc-8004.3669.1	0.71	-2.0
3,549,841	-				-1.3
3,549,901	+				-0.3
3,549,901	+				-0.3
3,549,901	+				-0.5
3,549,901	+				-1.3
3,549,902	-				+0.1
3,549,902	-				-1.3
3,549,902	-				+0.4
3,549,902	-				-1.7
3,549,934	+				+0.1
3,549,992	+				-0.4
3,550,002	-				+0.2
3,550,291	+		Xcc-8004.3670.1	0.36	-2.2
3,550,292	-		Xcc-8004.3670.1	0.37	-0.8
3,550,419	-		Xcc-8004.3670.1	0.54	+0.1
3,550,567	-		Xcc-8004.3670.1	0.75	+1.4
3,550,807	+				-1.3
3,550,807	+				+0.5
3,550,807	+				-0.2
3,550,807	+				-0.4
3,550,807	+				+0.4
3,550,808	-				+0.3
3,550,808	-				-0.2
3,550,808	-				+0.6
3,550,808	-				+1.0
3,550,808	-				-1.1
3,550,808	-				+1.7