Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3483.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3482.1 and Xcc-8004.3483.1 are separated by 771 nucleotidesXcc-8004.3483.1 and Xcc-8004.3484.1 are separated by 133 nucleotides Xcc-8004.3482.1: Xcc-8004.3482.1 - transcriptional regulator, at 3,369,776 to 3,370,810 Xcc-8004.3482.1 Xcc-8004.3483.1: Xcc-8004.3483.1 - Outer membrane protein A precursor, at 3,371,582 to 3,372,307 Xcc-8004.3483.1 Xcc-8004.3484.1: Xcc-8004.3484.1 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 3,372,441 to 3,374,003 Xcc-8004.3484.1 Position (kb) 3371 3372 3373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3370.682 kb on + strand, within Xcc-8004.3482.1at 3370.682 kb on + strand, within Xcc-8004.3482.1at 3370.683 kb on - strand, within Xcc-8004.3482.1at 3370.683 kb on - strand, within Xcc-8004.3482.1at 3370.683 kb on - strand, within Xcc-8004.3482.1at 3370.683 kb on - strand, within Xcc-8004.3482.1at 3370.801 kb on + strandat 3370.802 kb on - strandat 3370.918 kb on - strandat 3370.924 kb on - strandat 3370.939 kb on + strandat 3370.940 kb on - strandat 3370.971 kb on - strandat 3371.212 kb on + strandat 3371.213 kb on - strandat 3371.461 kb on - strandat 3371.486 kb on - strandat 3371.501 kb on + strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.502 kb on - strandat 3371.558 kb on - strandat 3371.558 kb on - strandat 3371.558 kb on - strandat 3371.596 kb on + strandat 3371.621 kb on + strandat 3371.819 kb on - strand, within Xcc-8004.3483.1at 3371.825 kb on - strand, within Xcc-8004.3483.1at 3371.856 kb on + strand, within Xcc-8004.3483.1at 3371.856 kb on + strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.857 kb on - strand, within Xcc-8004.3483.1at 3371.895 kb on + strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3371.896 kb on - strand, within Xcc-8004.3483.1at 3372.039 kb on + strand, within Xcc-8004.3483.1at 3372.040 kb on - strand, within Xcc-8004.3483.1at 3372.155 kb on - strand, within Xcc-8004.3483.1at 3372.207 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.225 kb on + strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.226 kb on - strand, within Xcc-8004.3483.1at 3372.460 kb on + strandat 3372.461 kb on - strandat 3372.461 kb on - strandat 3372.461 kb on - strandat 3372.518 kb on - strandat 3372.518 kb on - strandat 3372.518 kb on - strandat 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.616 kb on + strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.617 kb on - strand, within Xcc-8004.3484.1at 3372.674 kb on - strand, within Xcc-8004.3484.1at 3373.043 kb on + strand, within Xcc-8004.3484.1at 3373.043 kb on + strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.044 kb on - strand, within Xcc-8004.3484.1at 3373.045 kb on + strand, within Xcc-8004.3484.1at 3373.046 kb on - strand, within Xcc-8004.3484.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,370,682 + Xcc-8004.3482.1 0.88 +0.1
3,370,682 + Xcc-8004.3482.1 0.88 +1.7
3,370,683 - Xcc-8004.3482.1 0.88 -0.3
3,370,683 - Xcc-8004.3482.1 0.88 +0.6
3,370,683 - Xcc-8004.3482.1 0.88 -1.0
3,370,683 - Xcc-8004.3482.1 0.88 -1.3
3,370,801 + -0.8
3,370,802 - +0.0
3,370,918 - -2.0
3,370,924 - +0.6
3,370,939 + +0.4
3,370,940 - +0.1
3,370,971 - +0.1
3,371,212 + +3.3
3,371,213 - +1.2
3,371,461 - +0.2
3,371,486 - +2.0
3,371,501 + -0.8
3,371,502 - -1.2
3,371,502 - +1.2
3,371,502 - +1.5
3,371,502 - -1.0
3,371,558 - -0.5
3,371,558 - +0.6
3,371,558 - -0.3
3,371,596 + -1.4
3,371,621 + -0.4
3,371,819 - Xcc-8004.3483.1 0.33 -0.2
3,371,825 - Xcc-8004.3483.1 0.33 +1.5
3,371,856 + Xcc-8004.3483.1 0.38 -1.1
3,371,856 + Xcc-8004.3483.1 0.38 -1.3
3,371,857 - Xcc-8004.3483.1 0.38 +0.8
3,371,857 - Xcc-8004.3483.1 0.38 -0.9
3,371,857 - Xcc-8004.3483.1 0.38 -2.2
3,371,895 + Xcc-8004.3483.1 0.43 -1.5
3,371,896 - Xcc-8004.3483.1 0.43 -2.3
3,371,896 - Xcc-8004.3483.1 0.43 -2.3
3,371,896 - Xcc-8004.3483.1 0.43 -0.3
3,372,039 + Xcc-8004.3483.1 0.63 -0.8
3,372,040 - Xcc-8004.3483.1 0.63 -1.7
3,372,155 - Xcc-8004.3483.1 0.79 -0.0
3,372,207 + Xcc-8004.3483.1 0.86 -0.7
3,372,225 + Xcc-8004.3483.1 0.89 +0.6
3,372,225 + Xcc-8004.3483.1 0.89 -0.5
3,372,225 + Xcc-8004.3483.1 0.89 -0.0
3,372,225 + Xcc-8004.3483.1 0.89 -0.1
3,372,226 - Xcc-8004.3483.1 0.89 -0.7
3,372,226 - Xcc-8004.3483.1 0.89 -0.1
3,372,226 - Xcc-8004.3483.1 0.89 +0.7
3,372,460 + +1.6
3,372,461 - +0.2
3,372,461 - -0.4
3,372,461 - +0.6
3,372,518 - +0.5
3,372,518 - +1.5
3,372,518 - -1.4
3,372,616 + Xcc-8004.3484.1 0.11 -0.0
3,372,616 + Xcc-8004.3484.1 0.11 -0.5
3,372,616 + Xcc-8004.3484.1 0.11 -0.2
3,372,616 + Xcc-8004.3484.1 0.11 -1.4
3,372,616 + Xcc-8004.3484.1 0.11 -0.4
3,372,616 + Xcc-8004.3484.1 0.11 +0.2
3,372,616 + Xcc-8004.3484.1 0.11 +1.1
3,372,616 + Xcc-8004.3484.1 0.11 +0.7
3,372,616 + Xcc-8004.3484.1 0.11 +0.3
3,372,616 + Xcc-8004.3484.1 0.11 +0.1
3,372,616 + Xcc-8004.3484.1 0.11 +1.0
3,372,616 + Xcc-8004.3484.1 0.11 +0.1
3,372,617 - Xcc-8004.3484.1 0.11 +0.1
3,372,617 - Xcc-8004.3484.1 0.11 -0.8
3,372,617 - Xcc-8004.3484.1 0.11 -1.0
3,372,617 - Xcc-8004.3484.1 0.11 -2.2
3,372,674 - Xcc-8004.3484.1 0.15 -0.0
3,373,043 + Xcc-8004.3484.1 0.39 -0.1
3,373,043 + Xcc-8004.3484.1 0.39 +1.5
3,373,044 - Xcc-8004.3484.1 0.39 -0.6
3,373,044 - Xcc-8004.3484.1 0.39 +1.0
3,373,044 - Xcc-8004.3484.1 0.39 +0.9
3,373,045 + Xcc-8004.3484.1 0.39 +2.4
3,373,046 - Xcc-8004.3484.1 0.39 -0.8

Or see this region's nucleotide sequence