Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3435.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,326,194	+				-1.4
3,326,194	+				-0.0
3,326,194	+				-2.2
3,326,194	+				-0.1
3,326,194	+				-0.1
3,326,195	-				-0.2
3,326,195	-				-0.4
3,326,221	+				-0.2
3,326,221	+				-2.5
3,326,221	+				-1.0
3,326,221	+				+0.3
3,326,222	-				+1.0
3,326,222	-				-2.6
3,326,222	-				+0.3
3,326,290	+		Xcc-8004.3433.1	0.15	-1.4
3,326,290	+		Xcc-8004.3433.1	0.15	+0.1
3,326,290	+		Xcc-8004.3433.1	0.15	+0.8
3,326,290	+		Xcc-8004.3433.1	0.15	-0.4
3,326,291	-		Xcc-8004.3433.1	0.15	-0.7
3,326,291	-		Xcc-8004.3433.1	0.15	+0.6
3,326,291	-		Xcc-8004.3433.1	0.15	+0.3
3,326,291	-		Xcc-8004.3433.1	0.15	-2.2
3,326,291	-		Xcc-8004.3433.1	0.15	-1.8
3,326,291	-		Xcc-8004.3433.1	0.15	-0.6
3,326,291	-		Xcc-8004.3433.1	0.15	-1.3
3,326,291	-		Xcc-8004.3433.1	0.15	-0.2
3,326,291	-		Xcc-8004.3433.1	0.15	+0.5
3,326,305	+		Xcc-8004.3433.1	0.19	+0.0
3,326,305	+		Xcc-8004.3433.1	0.19	+1.2
3,326,305	+		Xcc-8004.3433.1	0.19	-2.4
3,326,306	-		Xcc-8004.3433.1	0.19	-1.9
3,326,306	-		Xcc-8004.3433.1	0.19	-1.1
3,326,306	-		Xcc-8004.3433.1	0.19	-2.4
3,326,306	-		Xcc-8004.3433.1	0.19	-1.4
3,326,306	-		Xcc-8004.3433.1	0.19	-1.2
3,326,351	+		Xcc-8004.3433.1	0.31	+0.3
3,326,351	+		Xcc-8004.3433.1	0.31	+0.8
3,326,351	+		Xcc-8004.3433.1	0.31	-1.0
3,326,431	+		Xcc-8004.3433.1	0.51	-3.1
3,326,431	+		Xcc-8004.3433.1	0.51	-1.8
3,326,431	+		Xcc-8004.3433.1	0.51	-1.6
3,326,431	+		Xcc-8004.3433.1	0.51	-1.7
3,326,432	-		Xcc-8004.3433.1	0.51	-1.7
3,326,432	-		Xcc-8004.3433.1	0.51	+1.6
3,326,432	-		Xcc-8004.3433.1	0.51	-1.5
3,326,432	-		Xcc-8004.3433.1	0.51	-1.1
3,326,432	-		Xcc-8004.3433.1	0.51	-1.3
3,326,530	+		Xcc-8004.3433.1	0.76	-0.7
3,326,530	+		Xcc-8004.3433.1	0.76	-0.8
3,326,531	-		Xcc-8004.3433.1	0.76	-1.1
3,326,531	-		Xcc-8004.3433.1	0.76	-2.4
3,326,531	-		Xcc-8004.3433.1	0.76	-1.5
3,326,531	-		Xcc-8004.3433.1	0.76	-2.5
3,326,769	+				-0.5
3,326,769	+				-0.1
3,326,770	-				-0.4
3,326,770	-				-2.2
3,326,849	+				-2.2
3,326,850	-				+0.2
3,326,850	-				-0.3
3,327,107	+		Xcc-8004.3435.1	0.87	-0.8
3,327,148	+				+0.5
3,327,148	+				-0.3
3,327,148	+				+1.4
3,327,149	-				+1.2
3,327,149	-				-1.1
3,327,149	-				+0.4
3,327,149	-				-0.0
3,327,149	-				-0.3
3,327,572	+				-0.3
3,327,572	+				+0.3
3,327,572	+				-1.0
3,327,572	+				+1.6
3,327,572	+				+0.3
3,327,573	-				-0.6
3,327,573	-				+1.6
3,327,573	-				-0.6
3,328,127	+				-0.3
3,328,128	-				-0.9