Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3100.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,031,215	-		Xcc-8004.3098.1	0.71	+0.2
3,031,277	+		Xcc-8004.3098.1	0.79	-1.1
3,031,278	-		Xcc-8004.3098.1	0.80	-0.2
3,031,278	-		Xcc-8004.3098.1	0.80	-1.8
3,031,278	-		Xcc-8004.3098.1	0.80	-0.2
3,031,278	-		Xcc-8004.3098.1	0.80	+0.3
3,031,278	-		Xcc-8004.3098.1	0.80	-1.2
3,031,278	-		Xcc-8004.3098.1	0.80	+1.5
3,031,278	-		Xcc-8004.3098.1	0.80	-0.1
3,031,298	-		Xcc-8004.3098.1	0.82	-1.9
3,031,482	-				-0.4
3,031,482	-				+2.6
3,031,548	+				+0.1
3,031,549	-				-1.9
3,031,583	+				+0.5
3,031,583	+				+0.7
3,031,659	+		Xcc-8004.3099.1	0.23	+0.0
3,031,659	+		Xcc-8004.3099.1	0.23	+1.6
3,031,659	+		Xcc-8004.3099.1	0.23	+0.4
3,031,660	-		Xcc-8004.3099.1	0.24	+0.5
3,031,660	-		Xcc-8004.3099.1	0.24	-2.3
3,031,660	-		Xcc-8004.3099.1	0.24	-0.9
3,031,660	-		Xcc-8004.3099.1	0.24	+1.3
3,031,668	-		Xcc-8004.3099.1	0.27	-0.6
3,031,688	+		Xcc-8004.3099.1	0.34	-1.1
3,031,817	+		Xcc-8004.3099.1	0.80	-1.0
3,031,817	+		Xcc-8004.3099.1	0.80	+1.3
3,031,817	+		Xcc-8004.3099.1	0.80	-1.1
3,031,818	-		Xcc-8004.3099.1	0.80	-0.3
3,031,818	-		Xcc-8004.3099.1	0.80	+0.7
3,031,983	+				-0.7
3,032,099	+				+0.7
3,032,100	-				-0.3
3,032,267	+				-1.0
3,032,268	-				-0.4
3,032,863	+		Xcc-8004.3100.1	0.38	-1.1
3,032,863	+		Xcc-8004.3100.1	0.38	+0.3
3,032,864	-		Xcc-8004.3100.1	0.38	-1.1
3,032,883	-		Xcc-8004.3100.1	0.39	-0.5
3,032,883	-		Xcc-8004.3100.1	0.39	-1.2
3,032,883	-		Xcc-8004.3100.1	0.39	-1.9
3,032,883	-		Xcc-8004.3100.1	0.39	-0.2
3,032,967	+		Xcc-8004.3100.1	0.44	-0.2
3,032,967	+		Xcc-8004.3100.1	0.44	-0.1
3,032,982	+		Xcc-8004.3100.1	0.44	-0.4
3,032,982	+		Xcc-8004.3100.1	0.44	-1.3
3,032,982	+		Xcc-8004.3100.1	0.44	-0.2
3,032,982	+		Xcc-8004.3100.1	0.44	+0.2
3,032,983	-		Xcc-8004.3100.1	0.44	+0.7
3,032,983	-		Xcc-8004.3100.1	0.44	+0.2
3,033,016	-		Xcc-8004.3100.1	0.46	+0.3
3,033,016	-		Xcc-8004.3100.1	0.46	+0.6
3,033,016	-		Xcc-8004.3100.1	0.46	-2.4
3,033,114	+		Xcc-8004.3100.1	0.51	+0.4
3,033,132	+		Xcc-8004.3100.1	0.52	-0.6
3,033,132	+		Xcc-8004.3100.1	0.52	+1.6
3,033,133	-		Xcc-8004.3100.1	0.52	-0.5
3,033,333	+		Xcc-8004.3100.1	0.62	-0.1
3,033,334	-		Xcc-8004.3100.1	0.62	+0.3
3,033,334	-		Xcc-8004.3100.1	0.62	-0.3
3,033,348	+		Xcc-8004.3100.1	0.63	-0.2
3,033,348	+		Xcc-8004.3100.1	0.63	-0.7
3,033,349	-		Xcc-8004.3100.1	0.63	+0.1
3,033,381	+		Xcc-8004.3100.1	0.65	-0.7
3,033,382	-		Xcc-8004.3100.1	0.65	+0.9
3,033,382	-		Xcc-8004.3100.1	0.65	-1.2
3,033,382	-		Xcc-8004.3100.1	0.65	+0.1
3,033,382	-		Xcc-8004.3100.1	0.65	+0.1
3,033,382	-		Xcc-8004.3100.1	0.65	-1.0
3,033,382	-		Xcc-8004.3100.1	0.65	-1.0
3,033,382	-		Xcc-8004.3100.1	0.65	+1.0
3,033,429	+		Xcc-8004.3100.1	0.67	-0.6
3,033,481	-		Xcc-8004.3100.1	0.70	+0.4
3,033,699	+		Xcc-8004.3100.1	0.81	+0.0
3,033,700	+		Xcc-8004.3100.1	0.81	+1.7
3,033,700	-		Xcc-8004.3100.1	0.81	-0.8
3,033,700	-		Xcc-8004.3100.1	0.81	-1.1
3,033,700	-		Xcc-8004.3100.1	0.81	-0.4
3,033,714	+		Xcc-8004.3100.1	0.82	-1.0
3,033,722	-		Xcc-8004.3100.1	0.82	-1.3
3,033,747	+		Xcc-8004.3100.1	0.83	+0.2
3,033,747	+		Xcc-8004.3100.1	0.83	+0.9
3,033,747	+		Xcc-8004.3100.1	0.83	-2.3
3,033,747	+		Xcc-8004.3100.1	0.83	+0.8
3,033,747	+		Xcc-8004.3100.1	0.83	-1.1
3,033,747	+		Xcc-8004.3100.1	0.83	-1.6
3,033,747	+		Xcc-8004.3100.1	0.83	-0.9
3,033,747	+		Xcc-8004.3100.1	0.83	-0.1
3,033,747	+		Xcc-8004.3100.1	0.83	-0.5
3,033,747	+		Xcc-8004.3100.1	0.83	-0.1
3,033,748	-		Xcc-8004.3100.1	0.83	-0.5
3,033,748	-		Xcc-8004.3100.1	0.83	-0.2
3,033,748	-		Xcc-8004.3100.1	0.83	-0.8
3,034,045	+				-0.8
3,034,045	+				+0.6
3,034,045	+				-1.8
3,034,045	+				-0.1
3,034,046	-				+0.1
3,034,046	-				-0.7
3,034,046	-				-1.4
3,034,046	-				+0.1
3,034,046	-				-0.6
3,034,046	-				+0.3
3,034,107	-				+1.1
3,034,161	+				-0.9
3,034,161	+				-1.8
3,034,161	+				-0.4
3,034,161	+				-0.3
3,034,161	+				-1.1
3,034,161	+				-0.7
3,034,162	-				-0.6
3,034,162	-				+0.1
3,034,172	+				+0.1
3,034,172	+				+0.6
3,034,173	-				-0.7
3,034,173	-				-0.3
3,034,221	+				-0.4
3,034,221	+				+1.5
3,034,221	+				+0.1
3,034,222	-				+0.4
3,034,222	-				-0.6
3,034,222	-				-0.9
3,034,222	-				+1.0
3,034,222	-				+0.7
3,034,225	+				+1.3
3,034,225	+				+0.1
3,034,226	-				-0.7
3,034,231	+				-0.2
3,034,231	+				-0.9
3,034,231	+				+0.7
3,034,263	+				-0.7
3,034,264	-				-0.1
3,034,264	-				+0.7
3,034,387	+				-0.2
3,034,388	-				-0.1
3,034,388	-				-0.1
3,034,412	+				-0.0
3,034,412	+				+1.0
3,034,413	-				-2.1
3,034,525	+				+1.1
3,034,526	-				+1.0
3,034,580	+				+0.8
3,034,620	+				+0.2
3,034,620	+				-0.1
3,034,620	+				-0.6
3,034,678	+				-0.1
3,034,678	+				+1.1
3,034,678	+				+0.2
3,034,679	-				-0.5
3,034,699	+				-0.9
3,034,699	+				-0.6
3,034,700	-				-0.4
3,034,748	-				-0.1
3,034,748	-				-1.5
3,034,748	-				-0.3
3,034,871	+				-1.4
3,034,871	+				+0.1
3,034,871	+				-0.3
3,034,871	+				+0.4
3,034,871	+				-0.3
3,034,871	+				-0.5
3,034,872	-				-0.6
3,034,872	-				-0.5
3,034,872	-				+1.3
3,034,872	-				+0.4
3,034,872	-				+0.1
3,034,872	-				-1.7
3,034,872	-				-0.1
3,034,872	-				-0.5
3,034,872	-				-0.3
3,034,872	-				+1.3
3,034,872	-				+0.4
3,034,872	-				-0.7
3,034,883	+		Xcc-8004.3103.1	0.43	-1.0
3,034,900	+		Xcc-8004.3103.1	0.48	-0.1
3,034,901	-		Xcc-8004.3103.1	0.48	+0.6
3,035,044	-				-1.1
3,035,050	+				-1.7
3,035,050	+				-1.8
3,035,050	+				+0.4
3,035,050	+				-0.9
3,035,050	+				+1.0
3,035,051	-				-0.0
3,035,051	-				-1.3
3,035,051	-				+0.4
3,035,051	-				+0.3
3,035,051	-				+0.3