Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2698.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,609,208	+		Xcc-8004.2697.1	0.78	-0.1
2,609,208	+		Xcc-8004.2697.1	0.78	-0.8
2,609,208	+		Xcc-8004.2697.1	0.78	-0.1
2,609,208	+		Xcc-8004.2697.1	0.78	+0.1
2,609,208	+		Xcc-8004.2697.1	0.78	+0.3
2,609,208	+		Xcc-8004.2697.1	0.78	-0.5
2,609,208	+		Xcc-8004.2697.1	0.78	-1.5
2,609,208	+		Xcc-8004.2697.1	0.78	+0.3
2,609,208	+		Xcc-8004.2697.1	0.78	+0.1
2,609,208	+		Xcc-8004.2697.1	0.78	+0.3
2,609,209	-		Xcc-8004.2697.1	0.78	-0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-1.2
2,609,209	-		Xcc-8004.2697.1	0.78	+0.7
2,609,209	-		Xcc-8004.2697.1	0.78	-1.5
2,609,209	-		Xcc-8004.2697.1	0.78	-0.3
2,609,209	-		Xcc-8004.2697.1	0.78	-0.1
2,609,209	-		Xcc-8004.2697.1	0.78	-0.4
2,609,209	-		Xcc-8004.2697.1	0.78	-0.2
2,609,209	-		Xcc-8004.2697.1	0.78	-0.3
2,609,209	-		Xcc-8004.2697.1	0.78	-0.2
2,609,209	-		Xcc-8004.2697.1	0.78	-0.3
2,609,209	-		Xcc-8004.2697.1	0.78	+0.7
2,609,209	-		Xcc-8004.2697.1	0.78	+1.8
2,609,250	+		Xcc-8004.2697.1	0.82	-0.0
2,609,250	+		Xcc-8004.2697.1	0.82	-0.6
2,609,251	-		Xcc-8004.2697.1	0.82	-0.2
2,609,251	-		Xcc-8004.2697.1	0.82	+0.1
2,609,288	+		Xcc-8004.2697.1	0.85	-0.5
2,609,288	+		Xcc-8004.2697.1	0.85	-1.0
2,609,288	+		Xcc-8004.2697.1	0.85	+0.3
2,609,289	-		Xcc-8004.2697.1	0.86	-0.2
2,609,289	-		Xcc-8004.2697.1	0.86	+0.6
2,609,367	-				+0.0
2,609,367	-				-2.9
2,609,367	-				-0.3
2,609,419	+				-0.4
2,609,419	+				+0.3
2,609,419	+				-1.7
2,609,419	+				-0.5
2,609,419	+				+0.2
2,609,419	+				-0.2
2,609,420	-				+1.0
2,609,469	+				+0.7
2,609,469	+				+0.4
2,609,470	-				-1.1
2,609,470	-				+0.1
2,609,487	+				+0.7
2,609,487	+				-1.0
2,609,513	+				+1.1
2,609,513	+				-1.0
2,609,514	-				+1.1
2,609,514	-				-0.5
2,609,514	-				+0.4
2,609,521	+				-0.2
2,609,521	+				-0.2
2,609,521	+				+1.1
2,609,522	-				+1.1
2,609,598	+				-0.6
2,609,598	+				-0.2
2,609,598	+				+0.3
2,609,598	+				-1.4
2,609,599	-				-0.9
2,609,599	-				+0.6
2,609,599	-				-1.2
2,609,599	-				+0.8
2,609,599	-				+0.7
2,609,599	-				-0.1
2,609,684	+				-0.9
2,609,684	+				-0.0
2,609,685	-				+0.3
2,609,685	-				-0.1
2,609,685	-				-0.6
2,609,695	+				-1.2
2,609,695	+				+1.2
2,609,696	-				-1.2
2,609,705	-				+0.6
2,609,727	+				+1.0
2,609,728	-				+0.7
2,609,728	-				-1.1
2,609,733	+				+1.3
2,609,733	+				+0.7
2,609,733	+				-0.0
2,609,733	+				+1.8
2,609,733	+				+0.5
2,609,733	+				+0.6
2,609,733	+				-0.3
2,609,733	+				+0.5
2,609,733	+				-0.2
2,609,733	+				+0.3
2,609,734	-				-0.7
2,609,734	-				-0.1
2,609,734	-				+1.1
2,609,734	-				+0.0
2,609,734	-				-0.2
2,609,824	+				+0.3
2,609,824	+				+1.2
2,609,824	+				+0.8
2,609,825	-				+0.3
2,609,838	-				+0.2
2,609,998	+		Xcc-8004.2698.1	0.34	+0.0
2,609,998	+		Xcc-8004.2698.1	0.34	-0.3
2,609,998	+		Xcc-8004.2698.1	0.34	+0.2
2,609,998	+		Xcc-8004.2698.1	0.34	-0.2
2,609,998	+		Xcc-8004.2698.1	0.34	-0.4
2,609,999	-		Xcc-8004.2698.1	0.35	+0.4
2,609,999	-		Xcc-8004.2698.1	0.35	+0.2
2,609,999	-		Xcc-8004.2698.1	0.35	+1.8
2,610,028	+		Xcc-8004.2698.1	0.40	+0.1
2,610,028	+		Xcc-8004.2698.1	0.40	+0.8
2,610,028	+		Xcc-8004.2698.1	0.40	-0.3
2,610,028	+		Xcc-8004.2698.1	0.40	+0.4
2,610,028	+		Xcc-8004.2698.1	0.40	-0.9
2,610,028	+		Xcc-8004.2698.1	0.40	-0.4
2,610,028	+		Xcc-8004.2698.1	0.40	+0.1
2,610,029	-		Xcc-8004.2698.1	0.40	-0.8
2,610,029	-		Xcc-8004.2698.1	0.40	-2.4
2,610,029	-		Xcc-8004.2698.1	0.40	-0.3
2,610,029	-		Xcc-8004.2698.1	0.40	-3.0
2,610,226	+		Xcc-8004.2698.1	0.79	+1.3
2,610,351	+				+1.2
2,610,351	+				-0.6
2,610,434	+				+0.1
2,610,434	+				-0.5
2,610,434	+				+0.4
2,610,434	+				+0.9
2,610,434	+				-0.3
2,610,434	+				-0.4
2,610,434	+				-1.9
2,610,434	+				-0.0
2,610,434	+				-0.8
2,610,434	+				-0.7
2,610,435	-				-0.4
2,610,435	-				-1.1
2,610,435	-				-0.3
2,610,435	-				-1.6
2,610,435	-				+0.0
2,610,435	-				-0.3
2,610,435	-				+1.0
2,610,435	-				-0.2
2,610,469	+				+0.9
2,610,469	+				+1.1
2,610,469	+				+0.5
2,610,470	-				-1.6
2,610,495	+				+0.2
2,610,495	+				+0.3
2,610,495	+				+0.7
2,610,495	+				-1.1
2,610,495	+				-1.4
2,610,495	+				+0.6
2,610,495	+				-1.4
2,610,495	+				-0.1
2,610,496	-				-1.7
2,610,496	-				-0.6
2,610,496	-				+0.0
2,610,496	-				-0.9
2,610,496	-				+0.7
2,610,496	-				+0.1
2,610,538	+				-0.3
2,610,538	+				-0.8
2,610,538	+				+0.9
2,610,539	-				-1.2
2,610,567	+				-0.4
2,610,567	+				+0.6
2,610,567	+				-0.2
2,610,567	+				+0.5
2,610,568	-				-0.3
2,610,568	-				+0.3
2,610,568	-				-1.1
2,610,568	-				-1.2
2,610,568	-				-0.0
2,610,568	-				-0.2
2,610,568	-				+0.4
2,610,568	-				+1.9
2,610,632	+				-1.4
2,610,633	-				-0.1
2,610,633	-				-0.1
2,610,644	-				-1.1
2,610,644	-				-1.7
2,610,883	-				-1.5
2,610,883	-				+2.0
2,610,903	-				+0.9
2,610,938	-				+0.8
2,611,088	+				+0.8
2,611,088	+				+0.8
2,611,088	+				+1.2
2,611,089	-				-0.1
2,611,089	-				-1.2
2,611,089	-				-1.9
2,611,089	-				-0.2
2,611,152	+		Xcc-8004.2699.1	0.25	-2.3
2,611,152	+		Xcc-8004.2699.1	0.25	-1.2
2,611,152	+		Xcc-8004.2699.1	0.25	-1.3
2,611,152	+		Xcc-8004.2699.1	0.25	-1.0
2,611,152	+		Xcc-8004.2699.1	0.25	-0.6
2,611,152	+		Xcc-8004.2699.1	0.25	-0.3
2,611,152	+		Xcc-8004.2699.1	0.25	-1.0
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,152	+		Xcc-8004.2699.1	0.25	-2.6
2,611,152	+		Xcc-8004.2699.1	0.25	-0.7
2,611,152	+		Xcc-8004.2699.1	0.25	-1.3
2,611,152	+		Xcc-8004.2699.1	0.25	-1.0
2,611,152	+		Xcc-8004.2699.1	0.25	-2.0
2,611,152	+		Xcc-8004.2699.1	0.25	-0.8
2,611,152	+		Xcc-8004.2699.1	0.25	-2.5
2,611,152	+		Xcc-8004.2699.1	0.25	-2.3
2,611,152	+		Xcc-8004.2699.1	0.25	-1.4
2,611,152	+		Xcc-8004.2699.1	0.25	-1.2
2,611,152	+		Xcc-8004.2699.1	0.25	-1.8
2,611,152	+		Xcc-8004.2699.1	0.25	-1.5
2,611,153	-				-1.7
2,611,153	-				-1.9
2,611,153	-				-0.8
2,611,153	-				-1.8
2,611,153	-				-1.6
2,611,153	-				-1.0
2,611,153	-				-3.5
2,611,153	-				-2.0
2,611,153	-				-2.5
2,611,153	-				-1.9
2,611,153	-				-0.7
2,611,153	-				-1.4
2,611,153	-				-0.0
2,611,153	-				-0.6
2,611,153	-				-1.8
2,611,153	-				-1.7
2,611,153	-				+0.1
2,611,153	-				-3.0
2,611,218	+				-2.3
2,611,218	+				-1.5