Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2695.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,604,535	+				-0.8
2,604,535	+				+0.0
2,604,535	+				-1.2
2,604,535	+				-1.7
2,604,535	+				-0.4
2,604,535	+				-1.2
2,604,536	-				-0.1
2,604,536	-				-1.7
2,604,536	-				-1.7
2,604,536	-				+0.4
2,604,536	-				+0.7
2,604,536	-				-0.0
2,604,536	-				+0.4
2,604,584	+				+0.1
2,604,584	+				+0.4
2,604,585	-				-0.1
2,604,585	-				-1.7
2,604,682	+				+0.1
2,604,683	-				+0.1
2,604,721	+				-0.2
2,604,721	+				-0.2
2,604,721	+				-0.7
2,604,721	+				-0.4
2,604,721	+				-0.6
2,604,722	-				-0.8
2,604,722	-				-0.7
2,604,722	-				-1.3
2,604,763	+				-0.1
2,604,763	+				+1.9
2,604,763	+				-1.9
2,604,763	+				-0.0
2,604,763	+				+0.9
2,604,763	+				-1.7
2,604,763	+				-1.5
2,604,763	+				-0.9
2,604,763	+				+0.1
2,604,763	+				+0.0
2,604,764	-				-0.7
2,604,764	-				-0.3
2,604,764	-				-1.0
2,604,764	-				+0.4
2,604,764	-				+0.7
2,604,764	-				-0.2
2,604,764	-				+0.0
2,604,764	-				+0.1
2,604,764	-				+0.2
2,604,764	-				-0.8
2,604,764	-				+2.7
2,604,764	-				-0.8
2,604,764	-				+1.2
2,604,764	-				-1.6
2,604,779	+				-0.5
2,604,779	+				-3.5
2,604,779	+				+0.9
2,604,779	+				-0.7
2,604,779	+				-1.7
2,604,779	+				-0.4
2,604,779	+				-1.7
2,604,779	+				-0.5
2,604,779	+				+0.1
2,604,779	+				-0.3
2,604,780	-				-1.0
2,604,780	-				-1.1
2,604,780	-				-1.0
2,604,780	-				-1.7
2,604,780	-				-1.9
2,604,780	-				-1.1
2,604,780	-				+0.2
2,604,856	+				-0.9
2,604,856	+				+0.4
2,604,857	-				-1.5
2,604,872	+				-0.3
2,604,887	+				+0.3
2,604,887	+				+0.7
2,604,887	+				-2.1
2,604,887	+				-0.3
2,604,887	+				-1.2
2,604,888	-				-1.0
2,604,888	-				-0.7
2,604,896	+				-0.8
2,604,896	+				-0.4
2,604,896	+				+2.7
2,604,896	+				+0.3
2,604,897	-				-1.5
2,604,925	+				-1.4
2,604,925	+				-1.0
2,604,925	+				-0.9
2,604,925	+				+0.6
2,604,926	-				-0.3
2,604,928	+				+0.2
2,604,928	+				+0.3
2,604,929	-				-1.9
2,604,929	-				-1.2
2,604,940	+				+0.7
2,604,940	+				-0.9
2,604,941	-				+1.7
2,604,960	+				+0.1
2,604,960	+				+0.3
2,604,960	+				+0.4
2,604,960	+				+0.4
2,604,960	+				-0.1
2,604,960	+				+0.6
2,604,961	-				+0.3
2,604,966	+				-0.0
2,604,972	+				+0.3
2,604,972	+				-3.5
2,604,972	+				-0.7
2,604,972	+				+0.6
2,604,972	+				-0.2
2,604,972	+				+0.3
2,604,972	+				+0.1
2,604,973	-				+1.1
2,604,973	-				-0.3
2,604,973	-				-1.0
2,604,973	-				+0.3
2,604,973	-				-2.9
2,604,976	+				+1.2
2,604,976	+				+0.3
2,604,976	+				+0.7
2,604,976	+				+0.9
2,604,976	+				-0.2
2,604,976	+				+0.4
2,604,976	+				+0.4
2,604,976	+				+0.0
2,604,976	+				+0.2
2,604,976	+				-1.1
2,604,976	+				-1.3
2,604,976	+				-1.8
2,604,976	+				+0.0
2,604,976	+				-1.8
2,604,977	-				-2.1
2,604,977	-				-2.8
2,604,977	-				+0.7
2,604,977	-				-1.6
2,605,010	+				-1.6
2,605,011	-				-2.5
2,605,011	-				-2.5
2,605,011	-				-0.5
2,605,011	-				-1.3
2,605,011	-				+0.3
2,605,031	+				-0.7
2,605,034	+				-0.7
2,605,034	+				-0.8
2,605,034	+				-0.4
2,605,034	+				+0.1
2,605,034	+				-0.5
2,605,035	-				+0.3
2,605,035	-				-1.1
2,605,035	-				-0.9
2,605,035	-				-1.1
2,605,035	-				+0.3
2,605,035	-				-2.0
2,605,035	-				-0.9
2,605,068	+				+1.7
2,605,084	+				+0.3
2,605,085	-				-2.2
2,605,110	+				-0.9
2,605,111	-				-1.8
2,605,111	-				-1.6
2,605,220	+				-0.0
2,605,220	+				+1.1
2,605,220	+				-0.2
2,605,220	+				-1.3
2,605,220	+				-1.4
2,605,221	-				-0.6
2,605,221	-				-2.8
2,605,221	-				+0.1
2,605,221	-				-0.2
2,605,272	+				-0.3
2,605,274	+				-1.3
2,605,274	+				+0.3
2,605,275	-				-0.1
2,605,275	-				-0.4
2,605,275	-				-0.8
2,605,329	+		Xcc-8004.2694.1	0.28	-2.8
2,605,330	-		Xcc-8004.2694.1	0.28	-0.4
2,605,330	-		Xcc-8004.2694.1	0.28	-1.2
2,605,400	+		Xcc-8004.2694.1	0.61	+0.7
2,605,400	+		Xcc-8004.2694.1	0.61	+0.1
2,605,400	+		Xcc-8004.2694.1	0.61	-1.0
2,605,400	+		Xcc-8004.2694.1	0.61	+1.0
2,605,400	+		Xcc-8004.2694.1	0.61	-0.3
2,605,400	+		Xcc-8004.2694.1	0.61	+1.9
2,605,401	-		Xcc-8004.2694.1	0.61	-0.1
2,605,438	+		Xcc-8004.2694.1	0.78	-0.4
2,605,438	+		Xcc-8004.2694.1	0.78	-1.5
2,605,452	+		Xcc-8004.2694.1	0.85	+0.9
2,605,452	+		Xcc-8004.2694.1	0.85	+0.8
2,605,452	+		Xcc-8004.2694.1	0.85	-2.0
2,605,536	+				+0.6
2,605,536	+				+0.1
2,605,536	+				-1.5
2,605,536	+				+0.1
2,605,536	+				+0.4
2,605,536	+				-1.5
2,605,537	-				-0.4
2,605,537	-				+0.5
2,605,537	-				-1.0
2,605,537	-				-1.7
2,605,537	-				-0.1
2,605,537	-				-0.5
2,605,537	-				+1.1
2,605,589	+				-1.1
2,605,589	+				-0.3
2,605,589	+				+0.9
2,605,589	+				+1.3
2,605,589	+				+0.4
2,605,589	+				-2.3
2,605,589	+				-0.9
2,605,589	+				+0.6
2,605,589	+				-0.2
2,605,589	+				+0.3
2,605,589	+				-0.4
2,605,590	-				-1.4
2,605,590	-				-0.5
2,605,590	-				+0.4
2,605,590	-				-1.2
2,605,629	+				+0.3
2,605,849	+		Xcc-8004.2695.1	0.21	+0.3
2,605,849	+		Xcc-8004.2695.1	0.21	-0.2
2,605,849	+		Xcc-8004.2695.1	0.21	-0.5
2,605,850	-		Xcc-8004.2695.1	0.21	-0.2
2,605,850	-		Xcc-8004.2695.1	0.21	+0.6
2,605,876	+		Xcc-8004.2695.1	0.22	-0.7
2,605,876	+		Xcc-8004.2695.1	0.22	+0.1
2,605,876	+		Xcc-8004.2695.1	0.22	+0.0
2,605,876	+		Xcc-8004.2695.1	0.22	+0.5
2,605,876	+		Xcc-8004.2695.1	0.22	-0.0
2,605,877	-		Xcc-8004.2695.1	0.22	-0.4
2,605,877	-		Xcc-8004.2695.1	0.22	-1.1
2,605,877	-		Xcc-8004.2695.1	0.22	-0.2
2,605,877	-		Xcc-8004.2695.1	0.22	-0.2
2,605,959	-		Xcc-8004.2695.1	0.27	+0.2
2,605,983	+		Xcc-8004.2695.1	0.28	+0.3
2,605,983	+		Xcc-8004.2695.1	0.28	+1.9
2,605,983	+		Xcc-8004.2695.1	0.28	-0.5
2,605,984	-		Xcc-8004.2695.1	0.28	+0.1
2,605,984	-		Xcc-8004.2695.1	0.28	-0.2
2,605,984	-		Xcc-8004.2695.1	0.28	+0.8
2,605,995	+		Xcc-8004.2695.1	0.29	-0.0
2,605,995	+		Xcc-8004.2695.1	0.29	-0.7
2,605,995	+		Xcc-8004.2695.1	0.29	+0.5
2,606,080	+		Xcc-8004.2695.1	0.34	-1.1
2,606,080	+		Xcc-8004.2695.1	0.34	-1.3
2,606,080	+		Xcc-8004.2695.1	0.34	+0.2
2,606,080	+		Xcc-8004.2695.1	0.34	-0.7
2,606,080	+		Xcc-8004.2695.1	0.34	-0.6
2,606,080	+		Xcc-8004.2695.1	0.34	-0.3
2,606,080	+		Xcc-8004.2695.1	0.34	+0.7
2,606,080	+		Xcc-8004.2695.1	0.34	+0.5
2,606,080	+		Xcc-8004.2695.1	0.34	+0.0
2,606,080	+		Xcc-8004.2695.1	0.34	+0.0
2,606,080	+		Xcc-8004.2695.1	0.34	-0.5
2,606,080	+		Xcc-8004.2695.1	0.34	+0.5
2,606,080	+		Xcc-8004.2695.1	0.34	+0.4
2,606,081	-		Xcc-8004.2695.1	0.34	+0.5
2,606,081	-		Xcc-8004.2695.1	0.34	+0.5
2,606,081	-		Xcc-8004.2695.1	0.34	-0.9
2,606,081	-		Xcc-8004.2695.1	0.34	+0.0
2,606,081	-		Xcc-8004.2695.1	0.34	-0.2
2,606,081	-		Xcc-8004.2695.1	0.34	-0.3
2,606,081	-		Xcc-8004.2695.1	0.34	+0.1
2,606,158	+		Xcc-8004.2695.1	0.38	-0.3
2,606,158	+		Xcc-8004.2695.1	0.38	-1.2
2,606,158	+		Xcc-8004.2695.1	0.38	-0.2
2,606,158	+		Xcc-8004.2695.1	0.38	+1.1
2,606,158	+		Xcc-8004.2695.1	0.38	-0.2
2,606,158	+		Xcc-8004.2695.1	0.38	-0.0
2,606,158	+		Xcc-8004.2695.1	0.38	+0.1
2,606,158	+		Xcc-8004.2695.1	0.38	-0.2
2,606,158	+		Xcc-8004.2695.1	0.38	+1.0
2,606,158	+		Xcc-8004.2695.1	0.38	+0.2
2,606,158	+		Xcc-8004.2695.1	0.38	+0.5
2,606,158	+		Xcc-8004.2695.1	0.38	+0.2
2,606,158	+		Xcc-8004.2695.1	0.38	-0.3
2,606,158	+		Xcc-8004.2695.1	0.38	-0.3
2,606,158	+		Xcc-8004.2695.1	0.38	-0.8
2,606,158	+		Xcc-8004.2695.1	0.38	+0.5
2,606,158	+		Xcc-8004.2695.1	0.38	-0.2
2,606,159	-		Xcc-8004.2695.1	0.38	-0.8
2,606,159	-		Xcc-8004.2695.1	0.38	-0.6
2,606,159	-		Xcc-8004.2695.1	0.38	-0.2
2,606,159	-		Xcc-8004.2695.1	0.38	+0.4
2,606,159	-		Xcc-8004.2695.1	0.38	-0.6
2,606,159	-		Xcc-8004.2695.1	0.38	-2.0
2,606,159	-		Xcc-8004.2695.1	0.38	-0.8
2,606,159	-		Xcc-8004.2695.1	0.38	+0.5
2,606,159	-		Xcc-8004.2695.1	0.38	+0.3
2,606,159	-		Xcc-8004.2695.1	0.38	+1.0
2,606,159	-		Xcc-8004.2695.1	0.38	+0.7
2,606,159	-		Xcc-8004.2695.1	0.38	+0.1
2,606,159	-		Xcc-8004.2695.1	0.38	-0.4
2,606,159	-		Xcc-8004.2695.1	0.38	-0.9
2,606,159	-		Xcc-8004.2695.1	0.38	-0.4
2,606,159	-		Xcc-8004.2695.1	0.38	-0.9
2,606,159	-		Xcc-8004.2695.1	0.38	-0.2
2,606,162	+		Xcc-8004.2695.1	0.38	+0.4
2,606,162	+		Xcc-8004.2695.1	0.38	-1.7
2,606,162	+		Xcc-8004.2695.1	0.38	+1.1
2,606,162	+		Xcc-8004.2695.1	0.38	+2.4
2,606,162	+		Xcc-8004.2695.1	0.38	-0.8
2,606,162	+		Xcc-8004.2695.1	0.38	-0.3
2,606,162	+		Xcc-8004.2695.1	0.38	-1.8
2,606,162	+		Xcc-8004.2695.1	0.38	-0.7
2,606,162	+		Xcc-8004.2695.1	0.38	+0.7
2,606,162	+		Xcc-8004.2695.1	0.38	-0.3
2,606,162	+		Xcc-8004.2695.1	0.38	-0.7
2,606,162	+		Xcc-8004.2695.1	0.38	+0.2
2,606,162	+		Xcc-8004.2695.1	0.38	-1.0
2,606,163	-		Xcc-8004.2695.1	0.38	+0.8
2,606,163	-		Xcc-8004.2695.1	0.38	+0.2
2,606,163	-		Xcc-8004.2695.1	0.38	-0.5
2,606,163	-		Xcc-8004.2695.1	0.38	-0.2
2,606,163	-		Xcc-8004.2695.1	0.38	+0.7
2,606,163	-		Xcc-8004.2695.1	0.38	-0.9
2,606,163	-		Xcc-8004.2695.1	0.38	+0.3
2,606,197	+		Xcc-8004.2695.1	0.40	-1.7
2,606,197	+		Xcc-8004.2695.1	0.40	+0.2
2,606,197	+		Xcc-8004.2695.1	0.40	-1.2
2,606,197	+		Xcc-8004.2695.1	0.40	-0.2
2,606,197	+		Xcc-8004.2695.1	0.40	-0.4
2,606,197	+		Xcc-8004.2695.1	0.40	-0.1
2,606,197	+		Xcc-8004.2695.1	0.40	-0.7
2,606,197	+		Xcc-8004.2695.1	0.40	-0.6
2,606,198	-		Xcc-8004.2695.1	0.40	-1.2
2,606,198	-		Xcc-8004.2695.1	0.40	-1.0
2,606,198	-		Xcc-8004.2695.1	0.40	-0.8
2,606,198	-		Xcc-8004.2695.1	0.40	-0.2
2,606,198	-		Xcc-8004.2695.1	0.40	-0.3
2,606,198	-		Xcc-8004.2695.1	0.40	-0.2
2,606,198	-		Xcc-8004.2695.1	0.40	-1.0
2,606,198	-		Xcc-8004.2695.1	0.40	-0.5
2,606,198	-		Xcc-8004.2695.1	0.40	-0.4
2,606,198	-		Xcc-8004.2695.1	0.40	+0.7
2,606,198	-		Xcc-8004.2695.1	0.40	-0.4
2,606,198	-		Xcc-8004.2695.1	0.40	+0.3
2,606,446	+		Xcc-8004.2695.1	0.54	+0.3
2,606,446	+		Xcc-8004.2695.1	0.54	+1.9
2,606,446	+		Xcc-8004.2695.1	0.54	-0.3
2,606,446	+		Xcc-8004.2695.1	0.54	-1.0
2,606,446	+		Xcc-8004.2695.1	0.54	-1.0
2,606,447	-		Xcc-8004.2695.1	0.54	-1.3
2,606,447	-		Xcc-8004.2695.1	0.54	-0.4
2,606,447	-		Xcc-8004.2695.1	0.54	+1.6
2,606,447	-		Xcc-8004.2695.1	0.54	+0.5
2,606,447	-		Xcc-8004.2695.1	0.54	-0.6
2,606,448	+		Xcc-8004.2695.1	0.54	+1.1
2,606,449	-		Xcc-8004.2695.1	0.54	+0.0
2,606,449	-		Xcc-8004.2695.1	0.54	-0.7
2,606,449	-		Xcc-8004.2695.1	0.54	+0.3
2,606,449	-		Xcc-8004.2695.1	0.54	-0.4
2,606,482	+		Xcc-8004.2695.1	0.56	-0.2
2,606,482	+		Xcc-8004.2695.1	0.56	-0.3
2,606,482	+		Xcc-8004.2695.1	0.56	+0.7
2,606,482	+		Xcc-8004.2695.1	0.56	+0.2
2,606,483	-		Xcc-8004.2695.1	0.56	+0.5
2,606,483	-		Xcc-8004.2695.1	0.56	-1.6
2,606,963	-		Xcc-8004.2695.1	0.83	-0.4
2,606,978	-		Xcc-8004.2695.1	0.84	+0.3
2,606,978	-		Xcc-8004.2695.1	0.84	-0.2
2,607,149	+				-0.4
2,607,223	+				+0.7
2,607,223	+				+0.3
2,607,223	+				-3.1
2,607,224	-				-0.5
2,607,224	-				+0.3
2,607,224	-				+1.1
2,607,224	-				+0.0
2,607,287	+				-1.2
2,607,288	-				+0.5
2,607,288	-				+0.1
2,607,288	-				+0.3
2,607,288	-				-1.0
2,607,407	+				+0.5
2,607,407	+				+0.6
2,607,407	+				+0.5
2,607,408	-				-0.4
2,607,408	-				+1.1
2,607,408	-				-1.2
2,607,494	-		Xcc-8004.2696.1	0.18	-0.9
2,607,494	-		Xcc-8004.2696.1	0.18	-0.4
2,607,637	+		Xcc-8004.2696.1	0.33	-0.4
2,607,637	+		Xcc-8004.2696.1	0.33	-0.3
2,607,637	+		Xcc-8004.2696.1	0.33	-1.0
2,607,637	+		Xcc-8004.2696.1	0.33	-0.6
2,607,637	+		Xcc-8004.2696.1	0.33	-0.1
2,607,638	-		Xcc-8004.2696.1	0.33	+0.5
2,607,638	-		Xcc-8004.2696.1	0.33	+0.6
2,607,638	-		Xcc-8004.2696.1	0.33	+1.1
2,607,638	-		Xcc-8004.2696.1	0.33	+0.8
2,607,638	-		Xcc-8004.2696.1	0.33	-0.1
2,607,638	-		Xcc-8004.2696.1	0.33	-0.2
2,607,638	-		Xcc-8004.2696.1	0.33	-0.0
2,607,759	-		Xcc-8004.2696.1	0.47	-0.1
2,607,875	-		Xcc-8004.2696.1	0.59	-0.7
2,607,875	-		Xcc-8004.2696.1	0.59	-0.4
2,607,875	-		Xcc-8004.2696.1	0.59	+0.7
2,607,875	-		Xcc-8004.2696.1	0.59	-0.9
2,607,875	-		Xcc-8004.2696.1	0.59	+2.1
2,607,875	-		Xcc-8004.2696.1	0.59	-0.8
2,607,875	-		Xcc-8004.2696.1	0.59	+1.4
2,607,875	-		Xcc-8004.2696.1	0.59	-0.1
2,607,925	+		Xcc-8004.2696.1	0.65	-0.9
2,607,925	+		Xcc-8004.2696.1	0.65	+0.1
2,607,925	+		Xcc-8004.2696.1	0.65	-0.2
2,607,925	+		Xcc-8004.2696.1	0.65	-0.1
2,607,925	+		Xcc-8004.2696.1	0.65	+0.5
2,607,925	+		Xcc-8004.2696.1	0.65	+0.5
2,607,925	+		Xcc-8004.2696.1	0.65	+0.4
2,607,925	+		Xcc-8004.2696.1	0.65	-0.5
2,607,925	+		Xcc-8004.2696.1	0.65	-0.7
2,607,925	+		Xcc-8004.2696.1	0.65	+0.0
2,607,925	+		Xcc-8004.2696.1	0.65	+1.3
2,607,925	+		Xcc-8004.2696.1	0.65	-0.4
2,607,926	-		Xcc-8004.2696.1	0.65	-0.6
2,607,926	-		Xcc-8004.2696.1	0.65	-1.2
2,607,926	-		Xcc-8004.2696.1	0.65	+0.5
2,607,967	-		Xcc-8004.2696.1	0.69	-1.1
2,607,982	+		Xcc-8004.2696.1	0.71	+0.1
2,607,982	+		Xcc-8004.2696.1	0.71	-1.1
2,607,982	+		Xcc-8004.2696.1	0.71	-0.7
2,607,982	+		Xcc-8004.2696.1	0.71	-1.6
2,607,982	+		Xcc-8004.2696.1	0.71	+0.3
2,607,983	-		Xcc-8004.2696.1	0.71	-0.4
2,607,983	-		Xcc-8004.2696.1	0.71	-0.2
2,607,983	-		Xcc-8004.2696.1	0.71	+0.5
2,608,041	-		Xcc-8004.2696.1	0.77	-0.1
2,608,060	+		Xcc-8004.2696.1	0.79	+0.2
2,608,060	+		Xcc-8004.2696.1	0.79	+0.5
2,608,060	+		Xcc-8004.2696.1	0.79	-0.1
2,608,060	+		Xcc-8004.2696.1	0.79	+0.7
2,608,060	+		Xcc-8004.2696.1	0.79	+0.2
2,608,060	+		Xcc-8004.2696.1	0.79	-0.4
2,608,060	+		Xcc-8004.2696.1	0.79	-0.8
2,608,060	+		Xcc-8004.2696.1	0.79	+0.8
2,608,060	+		Xcc-8004.2696.1	0.79	-1.0
2,608,060	+		Xcc-8004.2696.1	0.79	+0.1
2,608,061	-		Xcc-8004.2696.1	0.79	-0.2
2,608,061	-		Xcc-8004.2696.1	0.79	-0.2
2,608,061	-		Xcc-8004.2696.1	0.79	+0.3
2,608,090	+		Xcc-8004.2696.1	0.83	+0.5
2,608,090	+		Xcc-8004.2696.1	0.83	-0.3
2,608,090	+		Xcc-8004.2696.1	0.83	+0.7
2,608,091	-		Xcc-8004.2696.1	0.83	-1.0
2,608,091	-		Xcc-8004.2696.1	0.83	+0.1
2,608,150	+		Xcc-8004.2696.1	0.89	+0.2
2,608,150	+		Xcc-8004.2696.1	0.89	-2.3
2,608,150	+		Xcc-8004.2696.1	0.89	+1.1
2,608,150	+		Xcc-8004.2696.1	0.89	-2.3
2,608,150	+		Xcc-8004.2696.1	0.89	-0.6
2,608,150	+		Xcc-8004.2696.1	0.89	+0.4
2,608,151	-		Xcc-8004.2696.1	0.89	-0.7
2,608,151	-		Xcc-8004.2696.1	0.89	+1.8
2,608,151	-		Xcc-8004.2696.1	0.89	+0.0
2,608,151	-		Xcc-8004.2696.1	0.89	+0.2
2,608,151	-		Xcc-8004.2696.1	0.89	-1.7