Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2522.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,443,737	-		Xcc-8004.2519.1	0.89	-0.6
2,443,877	+				-0.8
2,443,877	+				-0.4
2,443,877	+				+0.0
2,443,878	-				-0.2
2,443,878	-				+1.2
2,443,878	-				+0.4
2,443,878	-				-0.7
2,443,885	+				+1.0
2,443,885	+				+0.5
2,443,886	-				-1.4
2,443,886	-				-0.8
2,443,948	+				-0.8
2,443,949	-				-0.6
2,443,949	-				+0.1
2,444,250	+		Xcc-8004.2520.1	0.61	-0.3
2,444,250	+		Xcc-8004.2520.1	0.61	-1.8
2,444,251	-		Xcc-8004.2520.1	0.61	-0.1
2,444,251	-		Xcc-8004.2520.1	0.61	-0.2
2,444,251	-		Xcc-8004.2520.1	0.61	-1.0
2,444,287	+		Xcc-8004.2520.1	0.69	+1.1
2,444,287	+		Xcc-8004.2520.1	0.69	-0.4
2,444,288	-		Xcc-8004.2520.1	0.69	-0.2
2,444,423	+				-0.5
2,444,424	-				+0.1
2,444,424	-				-0.3
2,444,424	-				-1.2
2,444,463	+				+0.4
2,444,463	+				-1.3
2,444,463	+				-3.5
2,444,463	+				-0.3
2,444,464	-				+1.3
2,444,464	-				-0.5
2,444,464	-				+0.2
2,444,464	-				+0.4
2,444,504	+				-1.3
2,444,505	-				-1.2
2,444,607	+				+1.1
2,444,900	+		Xcc-8004.2522.1	0.36	-0.7
2,444,941	-		Xcc-8004.2522.1	0.41	-0.4
2,444,941	-		Xcc-8004.2522.1	0.41	+0.8
2,444,941	-		Xcc-8004.2522.1	0.41	-0.5
2,444,948	+		Xcc-8004.2522.1	0.42	-0.1
2,444,948	+		Xcc-8004.2522.1	0.42	-0.6
2,444,948	+		Xcc-8004.2522.1	0.42	+1.3
2,444,948	+		Xcc-8004.2522.1	0.42	+2.8
2,444,948	+		Xcc-8004.2522.1	0.42	-0.9
2,444,948	+		Xcc-8004.2522.1	0.42	-1.9
2,444,948	+		Xcc-8004.2522.1	0.42	-0.4
2,444,948	+		Xcc-8004.2522.1	0.42	+0.1
2,444,948	+		Xcc-8004.2522.1	0.42	-0.2
2,444,948	+		Xcc-8004.2522.1	0.42	-1.2
2,444,949	-		Xcc-8004.2522.1	0.42	-0.2
2,444,949	-		Xcc-8004.2522.1	0.42	-0.2
2,444,949	-		Xcc-8004.2522.1	0.42	-0.0
2,444,949	-		Xcc-8004.2522.1	0.42	-0.7
2,444,949	-		Xcc-8004.2522.1	0.42	+2.4
2,445,011	-		Xcc-8004.2522.1	0.50	+1.4
2,445,119	+		Xcc-8004.2522.1	0.64	-0.0
2,445,119	+		Xcc-8004.2522.1	0.64	-0.0
2,445,119	+		Xcc-8004.2522.1	0.64	-0.4
2,445,119	+		Xcc-8004.2522.1	0.64	-0.4
2,445,119	+		Xcc-8004.2522.1	0.64	+0.1
2,445,119	+		Xcc-8004.2522.1	0.64	-0.0
2,445,119	+		Xcc-8004.2522.1	0.64	-1.2
2,445,120	-		Xcc-8004.2522.1	0.65	-1.0
2,445,120	-		Xcc-8004.2522.1	0.65	-1.4
2,445,120	-		Xcc-8004.2522.1	0.65	-0.5
2,445,153	-		Xcc-8004.2522.1	0.69	-2.4
2,445,287	-		Xcc-8004.2522.1	0.86	-1.4
2,445,287	-		Xcc-8004.2522.1	0.86	-0.4
2,445,287	-		Xcc-8004.2522.1	0.86	-0.3
2,445,407	+				+0.1
2,445,408	-				-1.6
2,445,563	+				-0.9
2,445,564	-				+0.1
2,445,564	-				-0.3
2,445,857	+		Xcc-8004.2524.1	0.16	-0.8
2,445,857	+		Xcc-8004.2524.1	0.16	+0.9
2,445,858	-		Xcc-8004.2524.1	0.16	-0.3
2,445,858	-		Xcc-8004.2524.1	0.16	+1.1
2,445,858	-		Xcc-8004.2524.1	0.16	-1.2
2,445,929	+		Xcc-8004.2524.1	0.18	-0.4
2,445,929	+		Xcc-8004.2524.1	0.18	+0.1
2,445,929	+		Xcc-8004.2524.1	0.18	+0.1
2,445,978	-		Xcc-8004.2524.1	0.20	-0.9
2,445,978	-		Xcc-8004.2524.1	0.20	-0.1
2,446,001	+		Xcc-8004.2524.1	0.21	+0.4
2,446,002	-		Xcc-8004.2524.1	0.21	+0.8
2,446,002	-		Xcc-8004.2524.1	0.21	-0.3
2,446,002	-		Xcc-8004.2524.1	0.21	-0.3
2,446,016	+		Xcc-8004.2524.1	0.21	+1.5
2,446,016	+		Xcc-8004.2524.1	0.21	+0.2
2,446,016	+		Xcc-8004.2524.1	0.21	+0.6
2,446,017	-		Xcc-8004.2524.1	0.21	+2.2
2,446,017	-		Xcc-8004.2524.1	0.21	-0.0
2,446,017	-		Xcc-8004.2524.1	0.21	+2.3
2,446,017	-		Xcc-8004.2524.1	0.21	-0.9
2,446,017	-		Xcc-8004.2524.1	0.21	+0.6
2,446,017	-		Xcc-8004.2524.1	0.21	+0.0
2,446,017	-		Xcc-8004.2524.1	0.21	-0.0
2,446,210	+		Xcc-8004.2524.1	0.28	+0.3
2,446,211	-		Xcc-8004.2524.1	0.28	-1.0
2,446,354	+		Xcc-8004.2524.1	0.33	+0.0
2,446,355	-		Xcc-8004.2524.1	0.33	+0.2