Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.251.1 and Xcc-8004.252.1 overlap by 8 nucleotides Xcc-8004.252.1 and Xcc-8004.253.1 are separated by 744 nucleotides
Xcc-8004.251.1: Xcc-8004.251.1 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 245,653 to 246,708
Xcc-8004.251.1
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Xcc-8004.253.1: Xcc-8004.253.1 - IcmF-related protein, at 248,876 to 249,256
Xcc-8004.253.1
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.209 kb on + strand, within Xcc-8004.251.1 at 246.210 kb on - strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.622 kb on + strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.720 kb on + strand at 246.969 kb on - strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.765 kb on - strand, within Xcc-8004.252.1 at 247.765 kb on - strand, within Xcc-8004.252.1 at 247.772 kb on + strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.135 kb on - strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.435 kb on + strand at 248.524 kb on - strand at 248.615 kb on - strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.630 kb on - strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.632 kb on - strand at 248.636 kb on + strand at 248.637 kb on + strand at 248.637 kb on + strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.646 kb on - strand at 248.702 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.887 kb on - strand at 248.887 kb on - strand at 248.930 kb on + strand, within Xcc-8004.253.1 at 248.931 kb on - strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 246,209 + Xcc-8004.251.1 0.53 -1.8 246,210 - Xcc-8004.251.1 0.53 -1.4 246,307 + Xcc-8004.251.1 0.62 -2.9 246,307 + Xcc-8004.251.1 0.62 -0.8 246,307 + Xcc-8004.251.1 0.62 -3.6 246,308 - Xcc-8004.251.1 0.62 +0.0 246,308 - Xcc-8004.251.1 0.62 +0.3 246,308 - Xcc-8004.251.1 0.62 -0.8 246,308 - Xcc-8004.251.1 0.62 -1.0 246,622 + +0.2 246,623 - -1.3 246,623 - -1.0 246,623 - +0.1 246,623 - +2.6 246,720 + +0.5 246,969 - Xcc-8004.252.1 0.19 +1.8 247,395 + Xcc-8004.252.1 0.48 -1.3 247,395 + Xcc-8004.252.1 0.48 -1.8 247,395 + Xcc-8004.252.1 0.48 -0.7 247,395 + Xcc-8004.252.1 0.48 +0.2 247,395 + Xcc-8004.252.1 0.48 +0.2 247,395 + Xcc-8004.252.1 0.48 -0.9 247,395 + Xcc-8004.252.1 0.48 -1.1 247,395 + Xcc-8004.252.1 0.48 +0.5 247,395 + Xcc-8004.252.1 0.48 -0.8 247,396 - Xcc-8004.252.1 0.49 -0.4 247,396 - Xcc-8004.252.1 0.49 +1.0 247,396 - Xcc-8004.252.1 0.49 +0.4 247,396 - Xcc-8004.252.1 0.49 -0.5 247,396 - Xcc-8004.252.1 0.49 +0.0 247,396 - Xcc-8004.252.1 0.49 +0.3 247,396 - Xcc-8004.252.1 0.49 -1.4 247,396 - Xcc-8004.252.1 0.49 -1.1 247,396 - Xcc-8004.252.1 0.49 -0.8 247,764 + Xcc-8004.252.1 0.74 +0.1 247,764 + Xcc-8004.252.1 0.74 -0.0 247,764 + Xcc-8004.252.1 0.74 +0.0 247,765 - Xcc-8004.252.1 0.74 -0.2 247,765 - Xcc-8004.252.1 0.74 +0.1 247,772 + Xcc-8004.252.1 0.75 +0.7 247,773 - Xcc-8004.252.1 0.75 -1.1 247,773 - Xcc-8004.252.1 0.75 -1.6 247,773 - Xcc-8004.252.1 0.75 -1.4 248,134 + +0.4 248,134 + -0.8 248,134 + -0.6 248,134 + -3.0 248,134 + +1.0 248,134 + -1.5 248,134 + -0.4 248,135 - -1.6 248,202 + -0.1 248,202 + -0.0 248,202 + +0.6 248,203 - -0.7 248,203 - -0.9 248,203 - -0.0 248,203 - -0.3 248,203 - -1.6 248,203 - +0.8 248,385 + -1.4 248,385 + +1.6 248,385 + -3.2 248,385 + -1.4 248,385 + -0.0 248,385 + -0.1 248,385 + -0.1 248,385 + +0.7 248,385 + -0.6 248,385 + -0.7 248,385 + -0.1 248,385 + -0.5 248,385 + +0.4 248,386 - -0.8 248,386 - +1.2 248,386 - -0.7 248,386 - -1.4 248,386 - -0.5 248,386 - -0.3 248,386 - +0.2 248,386 - +0.2 248,386 - +0.6 248,386 - -0.1 248,386 - -0.5 248,435 + -0.4 248,524 - -0.5 248,615 - +0.4 248,629 + +0.2 248,629 + -0.4 248,629 + +0.1 248,630 - +0.2 248,631 + -0.1 248,631 + -0.2 248,631 + -0.4 248,631 + +0.1 248,632 - +0.6 248,636 + +0.3 248,637 + +0.8 248,637 + -1.1 248,638 - +0.4 248,638 - -0.0 248,638 - +0.1 248,638 - -0.4 248,638 - -0.4 248,638 - +0.2 248,638 - -0.5 248,646 - -0.2 248,702 + +0.5 248,886 + -1.6 248,886 + -0.7 248,886 + +2.6 248,886 + -2.0 248,886 + +0.0 248,886 + -0.1 248,887 - +0.6 248,887 - +0.2 248,930 + Xcc-8004.253.1 0.14 -0.7 248,931 - Xcc-8004.253.1 0.14 +1.3 248,975 + Xcc-8004.253.1 0.26 -1.8 248,975 + Xcc-8004.253.1 0.26 -0.2 248,975 + Xcc-8004.253.1 0.26 -0.7 248,975 + Xcc-8004.253.1 0.26 -0.0 248,975 + Xcc-8004.253.1 0.26 +0.0 248,975 + Xcc-8004.253.1 0.26 +0.9 248,975 + Xcc-8004.253.1 0.26 -0.5 248,976 - Xcc-8004.253.1 0.26 -1.1 248,976 - Xcc-8004.253.1 0.26 +0.7
Or see this region's nucleotide sequence