Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.249.1 and Xcc-8004.251.1 are separated by 265 nucleotides Xcc-8004.251.1 and Xcc-8004.252.1 overlap by 8 nucleotides
Xcc-8004.249.1: Xcc-8004.249.1 - Ammonium transporter, at 243,912 to 245,387
Xcc-8004.249.1
Xcc-8004.251.1: Xcc-8004.251.1 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 245,653 to 246,708
Xcc-8004.251.1
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.707 kb on + strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 244.708 kb on - strand, within Xcc-8004.249.1 at 245.202 kb on + strand, within Xcc-8004.249.1 at 245.202 kb on + strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.203 kb on - strand, within Xcc-8004.249.1 at 245.376 kb on + strand at 245.376 kb on + strand at 245.376 kb on + strand at 245.376 kb on + strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.377 kb on - strand at 245.641 kb on + strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.642 kb on - strand at 245.691 kb on - strand at 245.695 kb on - strand at 245.695 kb on - strand at 246.209 kb on + strand, within Xcc-8004.251.1 at 246.210 kb on - strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.622 kb on + strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.720 kb on + strand at 246.969 kb on - strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 244,707 + Xcc-8004.249.1 0.54 -0.2 244,707 + Xcc-8004.249.1 0.54 +0.3 244,707 + Xcc-8004.249.1 0.54 -0.3 244,708 - Xcc-8004.249.1 0.54 -3.0 244,708 - Xcc-8004.249.1 0.54 +0.4 244,708 - Xcc-8004.249.1 0.54 +1.9 244,708 - Xcc-8004.249.1 0.54 -0.1 245,202 + Xcc-8004.249.1 0.87 -2.8 245,202 + Xcc-8004.249.1 0.87 -0.0 245,203 - Xcc-8004.249.1 0.87 +0.6 245,203 - Xcc-8004.249.1 0.87 +0.4 245,203 - Xcc-8004.249.1 0.87 -2.9 245,376 + -0.0 245,376 + -1.0 245,376 + -1.0 245,376 + -2.9 245,377 - +0.2 245,377 - -1.0 245,377 - +0.5 245,377 - -0.6 245,377 - +0.8 245,377 - -0.7 245,377 - +0.0 245,377 - +0.3 245,641 + -1.3 245,642 - -1.2 245,642 - -0.9 245,642 - +0.8 245,642 - -0.0 245,691 - -0.5 245,695 - -0.2 245,695 - -0.4 246,209 + Xcc-8004.251.1 0.53 -1.8 246,210 - Xcc-8004.251.1 0.53 -1.4 246,307 + Xcc-8004.251.1 0.62 -2.9 246,307 + Xcc-8004.251.1 0.62 -0.8 246,307 + Xcc-8004.251.1 0.62 -3.6 246,308 - Xcc-8004.251.1 0.62 +0.0 246,308 - Xcc-8004.251.1 0.62 +0.3 246,308 - Xcc-8004.251.1 0.62 -0.8 246,308 - Xcc-8004.251.1 0.62 -1.0 246,622 + +0.2 246,623 - -1.3 246,623 - -1.0 246,623 - +0.1 246,623 - +2.6 246,720 + +0.5 246,969 - Xcc-8004.252.1 0.19 +1.8 247,395 + Xcc-8004.252.1 0.48 -1.3 247,395 + Xcc-8004.252.1 0.48 -1.8 247,395 + Xcc-8004.252.1 0.48 -0.7 247,395 + Xcc-8004.252.1 0.48 +0.2 247,395 + Xcc-8004.252.1 0.48 +0.2 247,395 + Xcc-8004.252.1 0.48 -0.9 247,395 + Xcc-8004.252.1 0.48 -1.1 247,395 + Xcc-8004.252.1 0.48 +0.5 247,395 + Xcc-8004.252.1 0.48 -0.8 247,396 - Xcc-8004.252.1 0.49 -0.4 247,396 - Xcc-8004.252.1 0.49 +1.0 247,396 - Xcc-8004.252.1 0.49 +0.4 247,396 - Xcc-8004.252.1 0.49 -0.5 247,396 - Xcc-8004.252.1 0.49 +0.0 247,396 - Xcc-8004.252.1 0.49 +0.3 247,396 - Xcc-8004.252.1 0.49 -1.4 247,396 - Xcc-8004.252.1 0.49 -1.1 247,396 - Xcc-8004.252.1 0.49 -0.8
Or see this region's nucleotide sequence