Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.249.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.247.1 and Xcc-8004.248.1 are separated by 287 nucleotidesXcc-8004.248.1 and Xcc-8004.249.1 overlap by 11 nucleotidesXcc-8004.249.1 and Xcc-8004.251.1 are separated by 265 nucleotides Xcc-8004.247.1: Xcc-8004.247.1 - Glutamine synthetase type I (EC 6.3.1.2), at 241,887 to 243,296 Xcc-8004.247.1 Xcc-8004.248.1: Xcc-8004.248.1 - Nitrogen regulatory protein P-II, at 243,584 to 243,922 Xcc-8004.248.1 Xcc-8004.249.1: Xcc-8004.249.1 - Ammonium transporter, at 243,912 to 245,387 Xcc-8004.249.1 Xcc-8004.251.1: Xcc-8004.251.1 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 245,653 to 246,708 Xcc-8004.251.1 Position (kb) 243 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.401 kb on + strandat 243.401 kb on + strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.402 kb on - strandat 243.577 kb on + strandat 243.578 kb on - strandat 243.665 kb on - strand, within Xcc-8004.248.1at 243.719 kb on + strand, within Xcc-8004.248.1at 243.720 kb on - strand, within Xcc-8004.248.1at 243.720 kb on - strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.734 kb on + strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.735 kb on - strand, within Xcc-8004.248.1at 243.887 kb on - strand, within Xcc-8004.248.1at 243.944 kb on + strandat 243.945 kb on - strandat 243.945 kb on - strandat 243.984 kb on + strandat 243.985 kb on - strandat 243.985 kb on - strandat 243.985 kb on - strandat 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.242 kb on + strand, within Xcc-8004.249.1at 244.243 kb on - strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.332 kb on + strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.333 kb on - strand, within Xcc-8004.249.1at 244.338 kb on + strand, within Xcc-8004.249.1at 244.338 kb on + strand, within Xcc-8004.249.1at 244.339 kb on - strand, within Xcc-8004.249.1at 244.339 kb on - strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.458 kb on + strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.459 kb on - strand, within Xcc-8004.249.1at 244.585 kb on - strand, within Xcc-8004.249.1at 244.623 kb on + strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.624 kb on - strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.707 kb on + strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 244.708 kb on - strand, within Xcc-8004.249.1at 245.202 kb on + strand, within Xcc-8004.249.1at 245.202 kb on + strand, within Xcc-8004.249.1at 245.203 kb on - strand, within Xcc-8004.249.1at 245.203 kb on - strand, within Xcc-8004.249.1at 245.203 kb on - strand, within Xcc-8004.249.1at 245.376 kb on + strandat 245.376 kb on + strandat 245.376 kb on + strandat 245.376 kb on + strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.377 kb on - strandat 245.641 kb on + strandat 245.642 kb on - strandat 245.642 kb on - strandat 245.642 kb on - strandat 245.642 kb on - strandat 245.691 kb on - strandat 245.695 kb on - strandat 245.695 kb on - strandat 246.209 kb on + strand, within Xcc-8004.251.1at 246.210 kb on - strand, within Xcc-8004.251.1at 246.307 kb on + strand, within Xcc-8004.251.1at 246.307 kb on + strand, within Xcc-8004.251.1at 246.307 kb on + strand, within Xcc-8004.251.1at 246.308 kb on - strand, within Xcc-8004.251.1at 246.308 kb on - strand, within Xcc-8004.251.1at 246.308 kb on - strand, within Xcc-8004.251.1at 246.308 kb on - strand, within Xcc-8004.251.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
243,401 + -0.5
243,401 + -1.7
243,402 - -0.8
243,402 - +0.8
243,402 - +0.4
243,402 - -1.9
243,402 - +0.1
243,402 - +0.5
243,577 + -1.4
243,578 - +1.6
243,665 - Xcc-8004.248.1 0.24 -1.1
243,719 + Xcc-8004.248.1 0.40 -0.8
243,720 - Xcc-8004.248.1 0.40 -0.2
243,720 - Xcc-8004.248.1 0.40 -0.4
243,734 + Xcc-8004.248.1 0.44 -0.9
243,734 + Xcc-8004.248.1 0.44 +0.9
243,734 + Xcc-8004.248.1 0.44 -1.2
243,734 + Xcc-8004.248.1 0.44 -0.1
243,734 + Xcc-8004.248.1 0.44 +0.1
243,735 - Xcc-8004.248.1 0.45 -0.3
243,735 - Xcc-8004.248.1 0.45 -0.5
243,735 - Xcc-8004.248.1 0.45 +0.2
243,735 - Xcc-8004.248.1 0.45 -1.9
243,735 - Xcc-8004.248.1 0.45 +0.1
243,887 - Xcc-8004.248.1 0.89 +0.2
243,944 + -0.2
243,945 - +0.2
243,945 - -0.2
243,984 + +0.9
243,985 - +0.1
243,985 - -0.1
243,985 - -0.8
244,242 + Xcc-8004.249.1 0.22 -0.9
244,242 + Xcc-8004.249.1 0.22 -0.5
244,242 + Xcc-8004.249.1 0.22 +1.6
244,242 + Xcc-8004.249.1 0.22 +1.2
244,242 + Xcc-8004.249.1 0.22 -0.5
244,242 + Xcc-8004.249.1 0.22 -0.1
244,242 + Xcc-8004.249.1 0.22 -0.8
244,243 - Xcc-8004.249.1 0.22 -0.1
244,332 + Xcc-8004.249.1 0.28 +0.9
244,332 + Xcc-8004.249.1 0.28 +0.7
244,332 + Xcc-8004.249.1 0.28 -1.4
244,332 + Xcc-8004.249.1 0.28 +0.9
244,332 + Xcc-8004.249.1 0.28 +1.5
244,332 + Xcc-8004.249.1 0.28 -1.0
244,332 + Xcc-8004.249.1 0.28 +0.2
244,332 + Xcc-8004.249.1 0.28 -0.8
244,332 + Xcc-8004.249.1 0.28 -1.0
244,332 + Xcc-8004.249.1 0.28 +0.2
244,332 + Xcc-8004.249.1 0.28 +0.7
244,332 + Xcc-8004.249.1 0.28 -2.4
244,332 + Xcc-8004.249.1 0.28 -0.7
244,332 + Xcc-8004.249.1 0.28 -0.8
244,333 - Xcc-8004.249.1 0.29 +0.4
244,333 - Xcc-8004.249.1 0.29 -1.8
244,333 - Xcc-8004.249.1 0.29 -0.2
244,333 - Xcc-8004.249.1 0.29 -0.0
244,333 - Xcc-8004.249.1 0.29 +0.9
244,333 - Xcc-8004.249.1 0.29 -1.0
244,333 - Xcc-8004.249.1 0.29 -1.0
244,333 - Xcc-8004.249.1 0.29 +0.2
244,333 - Xcc-8004.249.1 0.29 +0.2
244,333 - Xcc-8004.249.1 0.29 -0.1
244,333 - Xcc-8004.249.1 0.29 -2.0
244,333 - Xcc-8004.249.1 0.29 -1.5
244,338 + Xcc-8004.249.1 0.29 +0.0
244,338 + Xcc-8004.249.1 0.29 +0.1
244,339 - Xcc-8004.249.1 0.29 +0.4
244,339 - Xcc-8004.249.1 0.29 +1.0
244,458 + Xcc-8004.249.1 0.37 -0.0
244,458 + Xcc-8004.249.1 0.37 -0.1
244,458 + Xcc-8004.249.1 0.37 -0.0
244,458 + Xcc-8004.249.1 0.37 +1.0
244,458 + Xcc-8004.249.1 0.37 -1.4
244,459 - Xcc-8004.249.1 0.37 -0.5
244,459 - Xcc-8004.249.1 0.37 -0.1
244,459 - Xcc-8004.249.1 0.37 -0.3
244,459 - Xcc-8004.249.1 0.37 -0.8
244,459 - Xcc-8004.249.1 0.37 -0.1
244,459 - Xcc-8004.249.1 0.37 +0.6
244,459 - Xcc-8004.249.1 0.37 -2.2
244,459 - Xcc-8004.249.1 0.37 -1.5
244,585 - Xcc-8004.249.1 0.46 +0.2
244,623 + Xcc-8004.249.1 0.48 -1.6
244,624 - Xcc-8004.249.1 0.48 +2.4
244,624 - Xcc-8004.249.1 0.48 +1.2
244,624 - Xcc-8004.249.1 0.48 -1.5
244,707 + Xcc-8004.249.1 0.54 -0.2
244,707 + Xcc-8004.249.1 0.54 +0.3
244,707 + Xcc-8004.249.1 0.54 -0.3
244,708 - Xcc-8004.249.1 0.54 -3.0
244,708 - Xcc-8004.249.1 0.54 +0.4
244,708 - Xcc-8004.249.1 0.54 +1.9
244,708 - Xcc-8004.249.1 0.54 -0.1
245,202 + Xcc-8004.249.1 0.87 -2.8
245,202 + Xcc-8004.249.1 0.87 -0.0
245,203 - Xcc-8004.249.1 0.87 +0.6
245,203 - Xcc-8004.249.1 0.87 +0.4
245,203 - Xcc-8004.249.1 0.87 -2.9
245,376 + -0.0
245,376 + -1.0
245,376 + -1.0
245,376 + -2.9
245,377 - +0.2
245,377 - -1.0
245,377 - +0.5
245,377 - -0.6
245,377 - +0.8
245,377 - -0.7
245,377 - +0.0
245,377 - +0.3
245,641 + -1.3
245,642 - -1.2
245,642 - -0.9
245,642 - +0.8
245,642 - -0.0
245,691 - -0.5
245,695 - -0.2
245,695 - -0.4
246,209 + Xcc-8004.251.1 0.53 -1.8
246,210 - Xcc-8004.251.1 0.53 -1.4
246,307 + Xcc-8004.251.1 0.62 -2.9
246,307 + Xcc-8004.251.1 0.62 -0.8
246,307 + Xcc-8004.251.1 0.62 -3.6
246,308 - Xcc-8004.251.1 0.62 +0.0
246,308 - Xcc-8004.251.1 0.62 +0.3
246,308 - Xcc-8004.251.1 0.62 -0.8
246,308 - Xcc-8004.251.1 0.62 -1.0

Or see this region's nucleotide sequence