Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2424.1 and Xcc-8004.2425.1 are separated by 192 nucleotides Xcc-8004.2425.1 and Xcc-8004.2426.1 are separated by 104 nucleotides Xcc-8004.2426.1 and Xcc-8004.2427.1 are separated by 36 nucleotides
Xcc-8004.2424.1: Xcc-8004.2424.1 - Nucleoside-diphosphate-sugar epimerases, at 2,364,887 to 2,366,098
Xcc-8004.2424.1
Xcc-8004.2425.1: Xcc-8004.2425.1 - FIG01211745: hypothetical protein, at 2,366,291 to 2,366,518
Xcc-8004.2425.1
Xcc-8004.2426.1: Xcc-8004.2426.1 - Transcription accessory protein (S1 RNA-binding domain), at 2,366,623 to 2,368,986
Xcc-8004.2426.1
Xcc-8004.2427.1: Xcc-8004.2427.1 - Two-component system sensor protein, at 2,369,023 to 2,372,463
Xcc-8004.2427.1
Position (kb) 2366
2367
2368
2369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2365.716 kb on + strand, within Xcc-8004.2424.1 at 2365.716 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.829 kb on - strand, within Xcc-8004.2424.1 at 2365.829 kb on - strand, within Xcc-8004.2424.1 at 2365.833 kb on + strand, within Xcc-8004.2424.1 at 2365.833 kb on + strand, within Xcc-8004.2424.1 at 2365.834 kb on - strand, within Xcc-8004.2424.1 at 2365.834 kb on - strand, within Xcc-8004.2424.1 at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.244 kb on - strand at 2366.244 kb on - strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.306 kb on + strand at 2366.307 kb on - strand at 2366.307 kb on - strand at 2366.333 kb on - strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.498 kb on + strand at 2366.499 kb on - strand at 2366.499 kb on - strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.818 kb on + strand at 2366.818 kb on + strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.954 kb on - strand, within Xcc-8004.2426.1 at 2366.954 kb on - strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.177 kb on + strand, within Xcc-8004.2426.1 at 2367.177 kb on + strand, within Xcc-8004.2426.1 at 2367.178 kb on - strand, within Xcc-8004.2426.1 at 2367.178 kb on - strand, within Xcc-8004.2426.1 at 2367.248 kb on - strand, within Xcc-8004.2426.1 at 2367.248 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.341 kb on - strand, within Xcc-8004.2426.1 at 2367.385 kb on + strand, within Xcc-8004.2426.1 at 2367.386 kb on - strand, within Xcc-8004.2426.1 at 2367.684 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.798 kb on + strand, within Xcc-8004.2426.1 at 2367.799 kb on - strand, within Xcc-8004.2426.1 at 2367.799 kb on - strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2368.042 kb on + strand, within Xcc-8004.2426.1 at 2368.042 kb on + strand, within Xcc-8004.2426.1 at 2368.043 kb on - strand, within Xcc-8004.2426.1 at 2368.043 kb on - strand, within Xcc-8004.2426.1 at 2368.063 kb on + strand, within Xcc-8004.2426.1 at 2368.064 kb on - strand, within Xcc-8004.2426.1 at 2368.064 kb on - strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.131 kb on + strand, within Xcc-8004.2426.1 at 2368.176 kb on + strand, within Xcc-8004.2426.1 at 2368.177 kb on - strand, within Xcc-8004.2426.1 at 2368.177 kb on - strand, within Xcc-8004.2426.1 at 2368.804 kb on - strand at 2369.045 kb on - strand at 2369.045 kb on - strand at 2369.169 kb on - strand at 2369.243 kb on + strand at 2369.244 kb on - strand at 2369.244 kb on - strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.719 kb on + strand, within Xcc-8004.2427.1 at 2369.720 kb on - strand, within Xcc-8004.2427.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 2,365,716 + Xcc-8004.2424.1 0.68 -1.5 2,365,716 + Xcc-8004.2424.1 0.68 +1.4 2,365,719 + Xcc-8004.2424.1 0.69 -0.4 2,365,719 + Xcc-8004.2424.1 0.69 -1.7 2,365,719 + Xcc-8004.2424.1 0.69 -1.8 2,365,719 + Xcc-8004.2424.1 0.69 +0.1 2,365,719 + Xcc-8004.2424.1 0.69 -1.4 2,365,719 + Xcc-8004.2424.1 0.69 +0.2 2,365,720 - Xcc-8004.2424.1 0.69 +1.2 2,365,720 - Xcc-8004.2424.1 0.69 -0.2 2,365,720 - Xcc-8004.2424.1 0.69 +0.0 2,365,720 - Xcc-8004.2424.1 0.69 -0.9 2,365,720 - Xcc-8004.2424.1 0.69 -0.9 2,365,720 - Xcc-8004.2424.1 0.69 +0.2 2,365,720 - Xcc-8004.2424.1 0.69 +0.2 2,365,720 - Xcc-8004.2424.1 0.69 +0.8 2,365,720 - Xcc-8004.2424.1 0.69 -0.9 2,365,806 + Xcc-8004.2424.1 0.76 +0.1 2,365,806 + Xcc-8004.2424.1 0.76 +0.6 2,365,806 + Xcc-8004.2424.1 0.76 -0.1 2,365,806 + Xcc-8004.2424.1 0.76 +0.4 2,365,806 + Xcc-8004.2424.1 0.76 +1.8 2,365,807 - Xcc-8004.2424.1 0.76 -0.2 2,365,807 - Xcc-8004.2424.1 0.76 -0.4 2,365,807 - Xcc-8004.2424.1 0.76 +0.3 2,365,807 - Xcc-8004.2424.1 0.76 +0.5 2,365,807 - Xcc-8004.2424.1 0.76 -2.1 2,365,828 + Xcc-8004.2424.1 0.78 +0.4 2,365,828 + Xcc-8004.2424.1 0.78 +0.4 2,365,828 + Xcc-8004.2424.1 0.78 -0.1 2,365,829 - Xcc-8004.2424.1 0.78 +0.1 2,365,829 - Xcc-8004.2424.1 0.78 +0.6 2,365,833 + Xcc-8004.2424.1 0.78 -1.5 2,365,833 + Xcc-8004.2424.1 0.78 -0.7 2,365,834 - Xcc-8004.2424.1 0.78 -2.6 2,365,834 - Xcc-8004.2424.1 0.78 +1.1 2,366,243 + +1.0 2,366,243 + -1.8 2,366,243 + -1.4 2,366,243 + -1.4 2,366,244 - -0.9 2,366,244 - +0.2 2,366,290 + -0.1 2,366,290 + -0.3 2,366,290 + -0.2 2,366,290 + +0.2 2,366,290 + -0.7 2,366,290 + -0.8 2,366,290 + -0.4 2,366,290 + +1.0 2,366,290 + -1.8 2,366,290 + +0.3 2,366,290 + -0.9 2,366,290 + -0.9 2,366,291 - -0.5 2,366,291 - -0.6 2,366,291 - -1.5 2,366,291 - +0.5 2,366,291 - -1.0 2,366,291 - +0.4 2,366,291 - -0.1 2,366,291 - +0.5 2,366,291 - -1.2 2,366,291 - +0.3 2,366,306 + -1.0 2,366,307 - +1.6 2,366,307 - +0.4 2,366,333 - Xcc-8004.2425.1 0.18 -1.4 2,366,396 + Xcc-8004.2425.1 0.46 -0.0 2,366,396 + Xcc-8004.2425.1 0.46 -0.3 2,366,396 + Xcc-8004.2425.1 0.46 -0.6 2,366,396 + Xcc-8004.2425.1 0.46 +1.2 2,366,396 + Xcc-8004.2425.1 0.46 +0.8 2,366,396 + Xcc-8004.2425.1 0.46 +0.2 2,366,396 + Xcc-8004.2425.1 0.46 -0.5 2,366,397 - Xcc-8004.2425.1 0.46 +0.8 2,366,397 - Xcc-8004.2425.1 0.46 -0.8 2,366,397 - Xcc-8004.2425.1 0.46 -2.4 2,366,397 - Xcc-8004.2425.1 0.46 +0.2 2,366,397 - Xcc-8004.2425.1 0.46 -0.7 2,366,397 - Xcc-8004.2425.1 0.46 -0.1 2,366,397 - Xcc-8004.2425.1 0.46 +1.1 2,366,397 - Xcc-8004.2425.1 0.46 +0.2 2,366,397 - Xcc-8004.2425.1 0.46 -0.2 2,366,498 + +0.3 2,366,499 - -1.2 2,366,499 - -1.5 2,366,530 + -0.2 2,366,530 + -0.6 2,366,530 + +0.8 2,366,530 + +0.6 2,366,530 + -0.4 2,366,531 - -1.8 2,366,531 - -2.4 2,366,531 - +2.6 2,366,531 - -0.9 2,366,531 - -1.5 2,366,536 + -1.4 2,366,536 + -0.8 2,366,536 + +0.5 2,366,536 + +0.4 2,366,536 + -0.2 2,366,536 + +1.1 2,366,537 - -0.3 2,366,537 - +0.7 2,366,537 - +0.3 2,366,537 - +0.4 2,366,818 + +0.4 2,366,818 + -1.3 2,366,819 - +0.2 2,366,819 - -0.9 2,366,819 - +0.4 2,366,819 - -0.4 2,366,944 + Xcc-8004.2426.1 0.14 -2.1 2,366,944 + Xcc-8004.2426.1 0.14 -0.6 2,366,944 + Xcc-8004.2426.1 0.14 -0.1 2,366,944 + Xcc-8004.2426.1 0.14 +0.3 2,366,944 + Xcc-8004.2426.1 0.14 +1.1 2,366,945 - Xcc-8004.2426.1 0.14 -0.4 2,366,945 - Xcc-8004.2426.1 0.14 +0.8 2,366,945 - Xcc-8004.2426.1 0.14 -1.3 2,366,945 - Xcc-8004.2426.1 0.14 -0.8 2,366,945 - Xcc-8004.2426.1 0.14 -0.9 2,366,945 - Xcc-8004.2426.1 0.14 -2.8 2,366,945 - Xcc-8004.2426.1 0.14 -0.6 2,366,953 + Xcc-8004.2426.1 0.14 +0.0 2,366,953 + Xcc-8004.2426.1 0.14 -1.9 2,366,953 + Xcc-8004.2426.1 0.14 +0.2 2,366,954 - Xcc-8004.2426.1 0.14 +0.5 2,366,954 - Xcc-8004.2426.1 0.14 -1.3 2,367,067 + Xcc-8004.2426.1 0.19 -1.1 2,367,067 + Xcc-8004.2426.1 0.19 +0.2 2,367,067 + Xcc-8004.2426.1 0.19 +0.3 2,367,067 + Xcc-8004.2426.1 0.19 +0.7 2,367,068 - Xcc-8004.2426.1 0.19 -1.7 2,367,068 - Xcc-8004.2426.1 0.19 -1.7 2,367,068 - Xcc-8004.2426.1 0.19 -0.0 2,367,068 - Xcc-8004.2426.1 0.19 +0.7 2,367,068 - Xcc-8004.2426.1 0.19 -0.4 2,367,068 - Xcc-8004.2426.1 0.19 -0.2 2,367,068 - Xcc-8004.2426.1 0.19 +0.1 2,367,068 - Xcc-8004.2426.1 0.19 +1.3 2,367,177 + Xcc-8004.2426.1 0.23 -0.1 2,367,177 + Xcc-8004.2426.1 0.23 -0.6 2,367,178 - Xcc-8004.2426.1 0.23 -0.4 2,367,178 - Xcc-8004.2426.1 0.23 +0.2 2,367,248 - Xcc-8004.2426.1 0.26 -0.5 2,367,248 - Xcc-8004.2426.1 0.26 -0.2 2,367,257 - Xcc-8004.2426.1 0.27 -0.4 2,367,257 - Xcc-8004.2426.1 0.27 -0.3 2,367,257 - Xcc-8004.2426.1 0.27 +1.2 2,367,340 + Xcc-8004.2426.1 0.30 -1.3 2,367,340 + Xcc-8004.2426.1 0.30 +0.2 2,367,340 + Xcc-8004.2426.1 0.30 -1.3 2,367,341 - Xcc-8004.2426.1 0.30 +0.3 2,367,385 + Xcc-8004.2426.1 0.32 -1.1 2,367,386 - Xcc-8004.2426.1 0.32 +0.4 2,367,684 - Xcc-8004.2426.1 0.45 +0.6 2,367,701 - Xcc-8004.2426.1 0.46 +0.9 2,367,701 - Xcc-8004.2426.1 0.46 +1.6 2,367,701 - Xcc-8004.2426.1 0.46 -1.4 2,367,701 - Xcc-8004.2426.1 0.46 -0.4 2,367,798 + Xcc-8004.2426.1 0.50 +1.2 2,367,799 - Xcc-8004.2426.1 0.50 -1.4 2,367,799 - Xcc-8004.2426.1 0.50 -1.8 2,367,901 + Xcc-8004.2426.1 0.54 +1.6 2,367,901 + Xcc-8004.2426.1 0.54 +2.1 2,367,901 + Xcc-8004.2426.1 0.54 -0.6 2,367,902 - Xcc-8004.2426.1 0.54 -0.3 2,367,902 - Xcc-8004.2426.1 0.54 +0.7 2,367,902 - Xcc-8004.2426.1 0.54 -0.5 2,368,042 + Xcc-8004.2426.1 0.60 -1.3 2,368,042 + Xcc-8004.2426.1 0.60 +0.2 2,368,043 - Xcc-8004.2426.1 0.60 -0.2 2,368,043 - Xcc-8004.2426.1 0.60 -0.2 2,368,063 + Xcc-8004.2426.1 0.61 -1.0 2,368,064 - Xcc-8004.2426.1 0.61 -0.7 2,368,064 - Xcc-8004.2426.1 0.61 +0.5 2,368,123 + Xcc-8004.2426.1 0.63 -0.8 2,368,123 + Xcc-8004.2426.1 0.63 -0.2 2,368,123 + Xcc-8004.2426.1 0.63 +0.3 2,368,124 - Xcc-8004.2426.1 0.63 -0.9 2,368,124 - Xcc-8004.2426.1 0.63 +1.7 2,368,124 - Xcc-8004.2426.1 0.63 -0.4 2,368,124 - Xcc-8004.2426.1 0.63 -1.4 2,368,131 + Xcc-8004.2426.1 0.64 +0.1 2,368,176 + Xcc-8004.2426.1 0.66 +2.6 2,368,177 - Xcc-8004.2426.1 0.66 +0.8 2,368,177 - Xcc-8004.2426.1 0.66 -0.2 2,368,804 - +1.1 2,369,045 - -0.9 2,369,045 - -0.2 2,369,169 - -0.4 2,369,243 + -1.3 2,369,244 - -0.0 2,369,244 - -1.2 2,369,288 + -0.3 2,369,288 + +0.3 2,369,288 + +0.6 2,369,288 + +0.1 2,369,289 - -1.4 2,369,289 - -0.1 2,369,289 - -1.0 2,369,289 - +0.7 2,369,289 - +0.1 2,369,289 - -1.5 2,369,289 - +0.1 2,369,289 - -0.2 2,369,719 + Xcc-8004.2427.1 0.20 -0.3 2,369,720 - Xcc-8004.2427.1 0.20 -0.2
Or see this region's nucleotide sequence