Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2150.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,075,674	+		Xcc-8004.2148.1	0.71	-0.2
2,075,675	-		Xcc-8004.2148.1	0.71	+0.2
2,075,762	-		Xcc-8004.2148.1	0.74	-0.5
2,075,762	-		Xcc-8004.2148.1	0.74	+0.9
2,075,762	-		Xcc-8004.2148.1	0.74	+0.6
2,075,762	-		Xcc-8004.2148.1	0.74	-0.0
2,075,970	-		Xcc-8004.2148.1	0.81	+0.6
2,076,016	+		Xcc-8004.2148.1	0.83	+0.4
2,076,016	+		Xcc-8004.2148.1	0.83	+0.9
2,076,017	-		Xcc-8004.2148.1	0.83	-1.8
2,076,054	-		Xcc-8004.2148.1	0.84	+0.2
2,076,054	-		Xcc-8004.2148.1	0.84	-0.6
2,076,066	+		Xcc-8004.2148.1	0.84	+0.6
2,076,067	-		Xcc-8004.2148.1	0.84	-0.8
2,076,071	-		Xcc-8004.2148.1	0.84	+0.2
2,076,071	-		Xcc-8004.2148.1	0.84	-0.7
2,076,083	-		Xcc-8004.2148.1	0.85	+0.0
2,076,142	+		Xcc-8004.2148.1	0.87	-1.6
2,076,142	+		Xcc-8004.2148.1	0.87	+0.4
2,076,142	+		Xcc-8004.2148.1	0.87	-0.0
2,076,142	+		Xcc-8004.2148.1	0.87	-1.1
2,076,235	+				+0.1
2,076,328	+				-0.6
2,076,334	+				+0.1
2,076,428	-				-0.7
2,076,428	-				-1.2
2,076,468	+				-0.1
2,076,468	+				-0.3
2,076,469	-				+0.3
2,076,469	-				-0.4
2,076,469	-				-0.7
2,076,469	-				-1.6
2,076,472	+				+0.2
2,076,472	+				+1.1
2,076,473	-				+0.4
2,076,473	-				-0.1
2,076,493	+				-0.1
2,076,662	-				-0.3
2,076,662	-				-0.3
2,076,940	+		Xcc-8004.2150.1	0.11	-2.4
2,076,941	-		Xcc-8004.2150.1	0.11	-1.0
2,076,970	+		Xcc-8004.2150.1	0.12	+0.4
2,077,018	+		Xcc-8004.2150.1	0.15	-1.4
2,077,019	-		Xcc-8004.2150.1	0.15	+0.4
2,077,019	-		Xcc-8004.2150.1	0.15	+0.9
2,077,019	-		Xcc-8004.2150.1	0.15	+0.0
2,077,346	+		Xcc-8004.2150.1	0.28	-2.1
2,077,654	-		Xcc-8004.2150.1	0.41	+0.3
2,077,679	+		Xcc-8004.2150.1	0.42	-1.6
2,077,772	-		Xcc-8004.2150.1	0.46	-0.4
2,077,772	-		Xcc-8004.2150.1	0.46	-0.6
2,077,801	+		Xcc-8004.2150.1	0.47	-1.6
2,077,801	+		Xcc-8004.2150.1	0.47	+1.3
2,077,835	-		Xcc-8004.2150.1	0.49	-0.3
2,077,900	+		Xcc-8004.2150.1	0.52	-0.3
2,077,900	+		Xcc-8004.2150.1	0.52	+0.7
2,077,901	-		Xcc-8004.2150.1	0.52	-0.4
2,078,050	+		Xcc-8004.2150.1	0.58	-0.1
2,078,050	+		Xcc-8004.2150.1	0.58	-0.0
2,078,051	-		Xcc-8004.2150.1	0.58	-0.3
2,078,251	+		Xcc-8004.2150.1	0.66	-0.7
2,078,252	-		Xcc-8004.2150.1	0.66	-1.6
2,078,488	+		Xcc-8004.2150.1	0.76	-1.5
2,078,488	+		Xcc-8004.2150.1	0.76	-0.8
2,078,488	+		Xcc-8004.2150.1	0.76	+0.8
2,078,489	-		Xcc-8004.2150.1	0.76	+1.8
2,078,534	-		Xcc-8004.2150.1	0.78	-0.9
2,078,735	-		Xcc-8004.2150.1	0.87	-0.2
2,078,936	-				-3.5
2,079,002	-				-0.7
2,079,150	-				+0.5
2,079,150	-				-0.3
2,079,170	-				-1.4
2,079,174	+				+0.6
2,079,175	-				-0.7
2,079,249	+				-2.5
2,079,273	-				+0.5
2,079,273	-				+0.8
2,079,376	+		Xcc-8004.2151.1	0.23	-0.1
2,079,379	+		Xcc-8004.2151.1	0.24	+1.1
2,079,379	+		Xcc-8004.2151.1	0.24	-0.8
2,079,379	+		Xcc-8004.2151.1	0.24	+2.6
2,079,388	+		Xcc-8004.2151.1	0.25	-0.3
2,079,525	-		Xcc-8004.2151.1	0.45	-0.1
2,079,888	+				-2.3
2,079,888	+				+1.8
2,079,889	-				+2.0
2,079,958	+				-1.1
2,079,958	+				+0.0
2,079,958	+				-0.9
2,079,962	+				-0.1
2,079,962	+				-0.6
2,079,963	-				-1.4