Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2147.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,070,552	+		Xcc-8004.2146.1	0.72	-0.1
2,070,552	+		Xcc-8004.2146.1	0.72	-1.2
2,070,552	+		Xcc-8004.2146.1	0.72	+1.2
2,070,553	-		Xcc-8004.2146.1	0.72	-0.8
2,070,558	+		Xcc-8004.2146.1	0.72	-0.3
2,070,708	-		Xcc-8004.2146.1	0.78	+0.3
2,070,771	+		Xcc-8004.2146.1	0.81	-1.5
2,070,772	-		Xcc-8004.2146.1	0.81	-0.6
2,071,336	+				+0.4
2,071,468	+				-1.6
2,071,469	-				-0.2
2,071,783	-		Xcc-8004.2147.1	0.20	+0.1
2,071,833	+		Xcc-8004.2147.1	0.23	+0.3
2,072,067	+		Xcc-8004.2147.1	0.36	+0.0
2,072,096	+		Xcc-8004.2147.1	0.37	+0.6
2,072,103	+		Xcc-8004.2147.1	0.38	+0.6
2,072,103	+		Xcc-8004.2147.1	0.38	+0.2
2,072,104	-		Xcc-8004.2147.1	0.38	+0.5
2,072,104	-		Xcc-8004.2147.1	0.38	+0.4
2,072,127	+		Xcc-8004.2147.1	0.39	+0.7
2,072,127	+		Xcc-8004.2147.1	0.39	-2.3
2,072,127	+		Xcc-8004.2147.1	0.39	+0.3
2,072,127	+		Xcc-8004.2147.1	0.39	-0.4
2,072,128	-		Xcc-8004.2147.1	0.39	+0.4
2,072,128	-		Xcc-8004.2147.1	0.39	+0.4
2,072,128	-		Xcc-8004.2147.1	0.39	+0.0
2,072,128	-		Xcc-8004.2147.1	0.39	+1.3
2,072,128	-		Xcc-8004.2147.1	0.39	-0.1
2,072,128	-		Xcc-8004.2147.1	0.39	+1.1
2,072,234	+		Xcc-8004.2147.1	0.45	-0.8
2,072,254	-		Xcc-8004.2147.1	0.46	+0.5
2,072,362	-		Xcc-8004.2147.1	0.53	-0.6
2,072,362	-		Xcc-8004.2147.1	0.53	-0.2
2,072,365	-		Xcc-8004.2147.1	0.53	+0.6
2,072,430	+		Xcc-8004.2147.1	0.56	-0.9
2,072,431	-		Xcc-8004.2147.1	0.56	-1.2
2,072,431	-		Xcc-8004.2147.1	0.56	-0.4
2,072,524	+		Xcc-8004.2147.1	0.62	-0.3
2,072,688	+		Xcc-8004.2147.1	0.71	+1.1
2,072,688	+		Xcc-8004.2147.1	0.71	-0.2
2,072,688	+		Xcc-8004.2147.1	0.71	-1.3
2,072,688	+		Xcc-8004.2147.1	0.71	+0.4
2,072,689	-		Xcc-8004.2147.1	0.71	-0.4
2,072,757	+		Xcc-8004.2147.1	0.75	+0.3
2,072,757	+		Xcc-8004.2147.1	0.75	+0.1
2,072,976	+		Xcc-8004.2147.1	0.87	+1.0
2,072,976	+		Xcc-8004.2147.1	0.87	+0.0
2,072,977	-		Xcc-8004.2147.1	0.87	-0.8
2,072,977	-		Xcc-8004.2147.1	0.87	+0.0
2,073,006	+		Xcc-8004.2147.1	0.89	+2.1
2,073,075	-				+1.2
2,073,077	+				-0.6
2,073,078	-				+0.2
2,073,078	-				-0.3
2,073,097	+				+0.8
2,073,120	+				+0.2
2,073,120	+				-1.4
2,073,121	-				+1.1
2,073,121	-				+1.3
2,073,121	-				+1.3
2,073,126	+				-0.4
2,073,126	+				+1.4
2,073,129	-				-0.0
2,073,364	+				-0.4
2,073,365	-				+1.0
2,073,365	-				-1.7
2,073,365	-				-0.1
2,073,365	-				-0.2
2,073,469	-				-0.9
2,073,514	-				-0.2
2,073,551	+				-0.0
2,073,552	-				-1.0
2,073,665	+				-0.0
2,073,665	+				-0.0
2,073,665	+				+0.7
2,073,666	-				+0.5
2,073,949	+		Xcc-8004.2148.1	0.11	-0.7
2,074,097	+		Xcc-8004.2148.1	0.16	+0.1
2,074,098	-		Xcc-8004.2148.1	0.16	+0.6
2,074,123	+		Xcc-8004.2148.1	0.17	-2.7
2,074,123	+		Xcc-8004.2148.1	0.17	-0.0
2,074,124	-		Xcc-8004.2148.1	0.17	-0.2