Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2145.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,066,302	-		Xcc-8004.2144.1	0.79	+0.5
2,066,414	+		Xcc-8004.2144.1	0.81	-1.5
2,066,414	+		Xcc-8004.2144.1	0.81	-0.8
2,066,450	+		Xcc-8004.2144.1	0.82	-1.1
2,066,450	+		Xcc-8004.2144.1	0.82	-1.1
2,066,451	-		Xcc-8004.2144.1	0.82	+0.1
2,066,451	-		Xcc-8004.2144.1	0.82	-0.1
2,066,451	-		Xcc-8004.2144.1	0.82	+1.5
2,066,451	-		Xcc-8004.2144.1	0.82	-0.5
2,066,493	-		Xcc-8004.2144.1	0.83	-0.6
2,066,493	-		Xcc-8004.2144.1	0.83	+0.3
2,066,598	-		Xcc-8004.2144.1	0.86	+0.1
2,067,059	+				-0.9
2,067,059	+				+0.3
2,067,060	-				-0.4
2,067,060	-				-0.9
2,067,060	-				+0.6
2,067,237	+				+0.9
2,067,237	+				-0.5
2,067,373	+				+1.3
2,067,373	+				-0.3
2,067,415	+		Xcc-8004.2145.1	0.12	-0.4
2,067,416	-		Xcc-8004.2145.1	0.12	+0.3
2,067,416	-		Xcc-8004.2145.1	0.12	+0.5
2,067,581	-		Xcc-8004.2145.1	0.22	+0.6
2,067,617	-		Xcc-8004.2145.1	0.25	-0.9
2,067,619	+		Xcc-8004.2145.1	0.25	+0.8
2,067,619	+		Xcc-8004.2145.1	0.25	-0.1
2,067,625	+		Xcc-8004.2145.1	0.25	-0.6
2,067,817	+		Xcc-8004.2145.1	0.37	+0.5
2,067,817	+		Xcc-8004.2145.1	0.37	+0.1
2,067,817	+		Xcc-8004.2145.1	0.37	+2.0
2,067,818	-		Xcc-8004.2145.1	0.37	-1.6
2,067,818	-		Xcc-8004.2145.1	0.37	+0.9
2,067,818	-		Xcc-8004.2145.1	0.37	+1.4
2,067,824	-		Xcc-8004.2145.1	0.38	+0.1
2,067,848	-		Xcc-8004.2145.1	0.39	+1.2
2,067,848	-		Xcc-8004.2145.1	0.39	+0.3
2,067,959	-		Xcc-8004.2145.1	0.46	-0.8
2,067,959	-		Xcc-8004.2145.1	0.46	+0.4
2,067,961	+		Xcc-8004.2145.1	0.46	+0.3
2,067,962	-		Xcc-8004.2145.1	0.46	-0.5
2,067,970	+		Xcc-8004.2145.1	0.47	+1.4
2,067,971	-		Xcc-8004.2145.1	0.47	+1.0
2,067,971	-		Xcc-8004.2145.1	0.47	-0.1
2,068,036	+		Xcc-8004.2145.1	0.51	+0.8
2,068,037	-		Xcc-8004.2145.1	0.51	-1.1
2,068,147	+		Xcc-8004.2145.1	0.58	-2.3
2,068,147	+		Xcc-8004.2145.1	0.58	+0.1
2,068,148	-		Xcc-8004.2145.1	0.58	+0.4
2,068,156	+		Xcc-8004.2145.1	0.58	-0.6
2,068,157	-		Xcc-8004.2145.1	0.58	-2.1
2,068,157	-		Xcc-8004.2145.1	0.58	+1.2
2,068,465	+		Xcc-8004.2145.1	0.78	-1.1
2,068,465	+		Xcc-8004.2145.1	0.78	+2.2
2,068,466	-		Xcc-8004.2145.1	0.78	-1.0
2,068,621	+		Xcc-8004.2145.1	0.87	-0.4
2,068,751	+				+0.4
2,068,751	+				-0.1
2,068,752	-				-0.5
2,069,028	+				-1.3
2,069,028	+				-0.5
2,069,353	+		Xcc-8004.2146.1	0.22	+1.8
2,069,353	+		Xcc-8004.2146.1	0.22	+1.6
2,069,353	+		Xcc-8004.2146.1	0.22	+0.2
2,069,354	-		Xcc-8004.2146.1	0.22	-2.6
2,069,354	-		Xcc-8004.2146.1	0.22	-1.7
2,069,354	-		Xcc-8004.2146.1	0.22	-0.7
2,069,562	+		Xcc-8004.2146.1	0.31	-0.6
2,069,563	-		Xcc-8004.2146.1	0.31	-0.5
2,069,563	-		Xcc-8004.2146.1	0.31	+0.5
2,069,647	-		Xcc-8004.2146.1	0.34	+0.8
2,069,649	+		Xcc-8004.2146.1	0.34	-0.4
2,069,649	+		Xcc-8004.2146.1	0.34	+2.8
2,069,650	-		Xcc-8004.2146.1	0.34	+0.0
2,069,703	+		Xcc-8004.2146.1	0.37	-0.1