Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2062.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,975,059	+		Xcc-8004.2061.1	0.75	+0.6
1,975,059	+		Xcc-8004.2061.1	0.75	-1.5
1,975,059	+		Xcc-8004.2061.1	0.75	-0.2
1,975,060	-		Xcc-8004.2061.1	0.75	-2.4
1,975,060	-		Xcc-8004.2061.1	0.75	+2.2
1,975,060	-		Xcc-8004.2061.1	0.75	+0.4
1,975,125	+		Xcc-8004.2061.1	0.77	-0.2
1,975,158	+		Xcc-8004.2061.1	0.79	+1.1
1,975,159	-		Xcc-8004.2061.1	0.79	+0.0
1,975,159	-		Xcc-8004.2061.1	0.79	-0.5
1,975,236	+		Xcc-8004.2061.1	0.81	+0.2
1,975,236	+		Xcc-8004.2061.1	0.81	+0.3
1,975,237	-		Xcc-8004.2061.1	0.81	-0.1
1,975,237	-		Xcc-8004.2061.1	0.81	+0.2
1,975,667	-				-0.8
1,975,667	-				-0.6
1,975,711	+				-0.3
1,975,711	+				+0.9
1,975,711	+				-0.9
1,975,711	+				+0.5
1,975,711	+				+0.4
1,975,711	+				+0.6
1,975,712	-				-1.1
1,975,712	-				-0.1
1,975,712	-				-0.7
1,975,712	-				+0.3
1,975,712	-				+0.3
1,975,712	-				+0.5
1,975,805	+				+0.9
1,975,805	+				-0.3
1,975,805	+				+0.2
1,975,805	+				-0.2
1,975,805	+				-0.5
1,975,805	+				+0.3
1,975,806	-				+1.2
1,975,806	-				+0.1
1,975,806	-				-0.1
1,975,806	-				-3.0
1,975,811	-				+1.1
1,975,844	+				+1.0
1,975,844	+				-0.9
1,975,845	-				-3.0
1,975,845	-				+1.1
1,975,845	-				+0.8
1,975,848	+				-0.8
1,975,848	+				+0.3
1,975,848	+				+0.1
1,975,848	+				-0.3
1,975,848	+				-1.1
1,975,849	-				-0.1
1,975,849	-				+1.1
1,976,021	+				+1.4
1,976,022	-				+0.5
1,976,147	+				-2.1
1,976,147	+				+1.7
1,976,147	+				-1.1
1,976,148	-				+0.2
1,976,274	+		Xcc-8004.2062.1	0.12	+0.5
1,976,303	+		Xcc-8004.2062.1	0.14	+1.4
1,976,304	-		Xcc-8004.2062.1	0.14	+0.1
1,976,304	-		Xcc-8004.2062.1	0.14	-0.9
1,976,304	-		Xcc-8004.2062.1	0.14	-0.1
1,976,393	+		Xcc-8004.2062.1	0.18	-1.8
1,976,394	-		Xcc-8004.2062.1	0.18	+0.7
1,976,432	+		Xcc-8004.2062.1	0.20	+0.0
1,976,432	+		Xcc-8004.2062.1	0.20	-0.4
1,976,432	+		Xcc-8004.2062.1	0.20	+0.3
1,976,433	-		Xcc-8004.2062.1	0.20	-0.3
1,976,444	+		Xcc-8004.2062.1	0.20	-0.1
1,976,445	-		Xcc-8004.2062.1	0.20	+0.1
1,976,522	+		Xcc-8004.2062.1	0.24	-1.4
1,976,522	+		Xcc-8004.2062.1	0.24	+0.7
1,976,522	+		Xcc-8004.2062.1	0.24	-0.8
1,976,523	-		Xcc-8004.2062.1	0.24	+1.8
1,976,606	+		Xcc-8004.2062.1	0.28	-0.1
1,976,606	+		Xcc-8004.2062.1	0.28	+0.4
1,976,606	+		Xcc-8004.2062.1	0.28	-0.1
1,976,606	+		Xcc-8004.2062.1	0.28	+0.2
1,976,606	+		Xcc-8004.2062.1	0.28	+0.2
1,976,607	-		Xcc-8004.2062.1	0.28	+1.2
1,976,648	+		Xcc-8004.2062.1	0.30	+0.2
1,976,649	-		Xcc-8004.2062.1	0.30	-2.2
1,976,864	+		Xcc-8004.2062.1	0.41	+0.2
1,976,865	-		Xcc-8004.2062.1	0.41	+0.6
1,976,898	-		Xcc-8004.2062.1	0.42	-0.6
1,976,898	-		Xcc-8004.2062.1	0.42	+2.6
1,976,898	-		Xcc-8004.2062.1	0.42	-0.8
1,976,898	-		Xcc-8004.2062.1	0.42	-0.0
1,976,960	+		Xcc-8004.2062.1	0.45	-0.3
1,976,961	-		Xcc-8004.2062.1	0.45	+0.7
1,976,961	-		Xcc-8004.2062.1	0.45	+0.7
1,976,961	-		Xcc-8004.2062.1	0.45	+0.0
1,976,961	-		Xcc-8004.2062.1	0.45	+0.8
1,976,964	+		Xcc-8004.2062.1	0.45	+0.1
1,976,964	+		Xcc-8004.2062.1	0.45	+2.6
1,976,964	+		Xcc-8004.2062.1	0.45	+0.8
1,976,964	+		Xcc-8004.2062.1	0.45	+0.6
1,976,964	+		Xcc-8004.2062.1	0.45	+1.3
1,976,964	+		Xcc-8004.2062.1	0.45	-0.2
1,976,964	+		Xcc-8004.2062.1	0.45	-0.5
1,976,964	+		Xcc-8004.2062.1	0.45	-2.4
1,976,965	-		Xcc-8004.2062.1	0.45	+0.1
1,976,965	-		Xcc-8004.2062.1	0.45	-0.8
1,976,965	-		Xcc-8004.2062.1	0.45	+0.1
1,976,965	-		Xcc-8004.2062.1	0.45	+2.6
1,976,965	-		Xcc-8004.2062.1	0.45	+0.9
1,976,965	-		Xcc-8004.2062.1	0.45	+1.2
1,976,965	-		Xcc-8004.2062.1	0.45	+0.4
1,976,965	-		Xcc-8004.2062.1	0.45	+0.0
1,976,965	-		Xcc-8004.2062.1	0.45	-0.9
1,977,107	+		Xcc-8004.2062.1	0.52	-1.0
1,977,107	+		Xcc-8004.2062.1	0.52	-0.1
1,977,107	+		Xcc-8004.2062.1	0.52	+0.8
1,977,108	-		Xcc-8004.2062.1	0.52	+0.2
1,977,198	-		Xcc-8004.2062.1	0.57	-0.3
1,977,198	-		Xcc-8004.2062.1	0.57	+1.7
1,977,198	-		Xcc-8004.2062.1	0.57	+2.2
1,977,198	-		Xcc-8004.2062.1	0.57	+0.2
1,977,198	-		Xcc-8004.2062.1	0.57	-0.6
1,977,198	-		Xcc-8004.2062.1	0.57	+1.9
1,977,198	-		Xcc-8004.2062.1	0.57	+0.5
1,977,340	+		Xcc-8004.2062.1	0.63	+0.0
1,977,419	+		Xcc-8004.2062.1	0.67	-0.3
1,977,487	-		Xcc-8004.2062.1	0.71	+0.4
1,977,524	+		Xcc-8004.2062.1	0.72	-0.7
1,977,524	+		Xcc-8004.2062.1	0.72	-0.3
1,977,524	+		Xcc-8004.2062.1	0.72	+0.7
1,977,530	+		Xcc-8004.2062.1	0.73	+0.1
1,977,531	-		Xcc-8004.2062.1	0.73	-0.2
1,977,531	-		Xcc-8004.2062.1	0.73	-0.1
1,977,654	-		Xcc-8004.2062.1	0.79	-0.4
1,977,678	-		Xcc-8004.2062.1	0.80	+0.4
1,977,750	-		Xcc-8004.2062.1	0.83	-1.1
1,977,917	+				+1.0
1,977,917	+				+0.2
1,977,918	-				-0.5
1,977,918	-				+0.9
1,978,099	-				+1.1
1,978,189	+				+1.1
1,978,189	+				-0.7
1,978,189	+				-1.1
1,978,189	+				+0.8
1,978,189	+				+0.0
1,978,190	-				+0.6
1,978,190	-				+0.0
1,978,190	-				-0.0
1,978,190	-				-1.5
1,978,190	-				-0.4
1,978,190	-				+0.2
1,978,190	-				+2.2
1,978,190	-				-1.5
1,978,193	+				+0.8
1,978,193	+				-0.4
1,978,194	-				-0.1
1,978,194	-				-0.6
1,978,194	-				+0.2
1,978,194	-				-0.1
1,978,194	-				+0.1
1,978,226	+				+0.2
1,978,226	+				+0.7
1,978,227	-				-1.4
1,978,227	-				+1.8
1,978,244	-				+0.5
1,978,244	-				-1.0
1,978,665	+		Xcc-8004.2063.1	0.20	+0.6
1,978,665	+		Xcc-8004.2063.1	0.20	-0.5
1,978,665	+		Xcc-8004.2063.1	0.20	+0.4
1,978,666	-		Xcc-8004.2063.1	0.20	+0.3
1,978,972	-		Xcc-8004.2063.1	0.33	+0.0
1,978,972	-		Xcc-8004.2063.1	0.33	-0.4
1,979,013	+		Xcc-8004.2063.1	0.34	+0.2
1,979,014	-		Xcc-8004.2063.1	0.35	+0.5
1,979,014	-		Xcc-8004.2063.1	0.35	-0.3
1,979,014	-		Xcc-8004.2063.1	0.35	+0.2