Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1515.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,452,459	-				-0.1
1,452,459	-				-0.1
1,453,098	+		Xcc-8004.1514.1	0.70	-0.7
1,453,098	+		Xcc-8004.1514.1	0.70	-0.6
1,453,099	-		Xcc-8004.1514.1	0.70	+0.4
1,453,099	-		Xcc-8004.1514.1	0.70	-1.2
1,453,099	-		Xcc-8004.1514.1	0.70	-0.4
1,453,099	-		Xcc-8004.1514.1	0.70	+0.2
1,453,344	+				-1.0
1,453,598	+		Xcc-8004.1515.1	0.24	-0.3
1,453,598	+		Xcc-8004.1515.1	0.24	+0.3
1,453,598	+		Xcc-8004.1515.1	0.24	+1.4
1,453,598	+		Xcc-8004.1515.1	0.24	-1.0
1,453,598	+		Xcc-8004.1515.1	0.24	-0.9
1,453,908	+		Xcc-8004.1515.1	0.66	-0.4
1,453,909	-		Xcc-8004.1515.1	0.66	+0.0
1,454,159	+				-0.8
1,454,160	-				+0.9
1,454,184	+				-1.5
1,454,184	+				+0.0
1,454,185	-				+0.4
1,454,185	-				-0.1
1,454,185	-				-1.8
1,454,187	+				+0.3
1,454,187	+				+1.4
1,454,187	+				+0.7
1,454,188	-				+0.3
1,454,210	-				-1.1
1,454,210	-				+1.7
1,454,438	+				+0.4
1,454,454	-				+1.3
1,454,454	-				+0.7
1,454,454	-				+2.3
1,454,834	-		Xcc-8004.1516.1	0.39	-1.0
1,454,888	-		Xcc-8004.1516.1	0.44	-0.6
1,454,938	+		Xcc-8004.1516.1	0.48	+0.7
1,454,938	+		Xcc-8004.1516.1	0.48	-0.3
1,454,939	-		Xcc-8004.1516.1	0.48	+1.0
1,454,942	-		Xcc-8004.1516.1	0.48	-1.9