Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1512.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1511.1 and Xcc-8004.1512.1 overlap by 4 nucleotidesXcc-8004.1512.1 and Xcc-8004.1513.1 are separated by 129 nucleotides Xcc-8004.1511.1: Xcc-8004.1511.1 - Ribonuclease E (EC 3.1.26.12), at 1,447,733 to 1,449,619 Xcc-8004.1511.1 Xcc-8004.1512.1: Xcc-8004.1512.1 - RNA polymerase sigma-70 factor, at 1,449,616 to 1,450,146 Xcc-8004.1512.1 Xcc-8004.1513.1: Xcc-8004.1513.1 - Von Willebrand factor type A domain protein, at 1,450,276 to 1,452,069 Xcc-8004.1513.1 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -1 0 1at 1448.705 kb on + strand, within Xcc-8004.1511.1at 1449.659 kb on + strandat 1450.039 kb on + strand, within Xcc-8004.1512.1at 1450.039 kb on + strand, within Xcc-8004.1512.1at 1450.039 kb on + strand, within Xcc-8004.1512.1at 1450.040 kb on - strand, within Xcc-8004.1512.1at 1450.040 kb on - strand, within Xcc-8004.1512.1at 1450.199 kb on + strandat 1450.200 kb on - strandat 1450.566 kb on - strand, within Xcc-8004.1513.1at 1450.602 kb on + strand, within Xcc-8004.1513.1at 1450.634 kb on + strand, within Xcc-8004.1513.1at 1450.682 kb on + strand, within Xcc-8004.1513.1at 1450.683 kb on - strand, within Xcc-8004.1513.1at 1450.788 kb on - strand, within Xcc-8004.1513.1at 1451.112 kb on - strand, within Xcc-8004.1513.1at 1451.132 kb on + strand, within Xcc-8004.1513.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,448,705 + Xcc-8004.1511.1 0.52 -1.7
1,449,659 + -0.2
1,450,039 + Xcc-8004.1512.1 0.80 -0.7
1,450,039 + Xcc-8004.1512.1 0.80 +0.6
1,450,039 + Xcc-8004.1512.1 0.80 -0.9
1,450,040 - Xcc-8004.1512.1 0.80 -1.0
1,450,040 - Xcc-8004.1512.1 0.80 -0.5
1,450,199 + -1.7
1,450,200 - +0.8
1,450,566 - Xcc-8004.1513.1 0.16 +1.4
1,450,602 + Xcc-8004.1513.1 0.18 -0.3
1,450,634 + Xcc-8004.1513.1 0.20 -0.6
1,450,682 + Xcc-8004.1513.1 0.23 +0.0
1,450,683 - Xcc-8004.1513.1 0.23 +0.7
1,450,788 - Xcc-8004.1513.1 0.29 +0.4
1,451,112 - Xcc-8004.1513.1 0.47 +1.0
1,451,132 + Xcc-8004.1513.1 0.48 +0.4

Or see this region's nucleotide sequence