Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.149.1 and Xcc-8004.150.1 are separated by 125 nucleotides Xcc-8004.150.1 and Xcc-8004.151.1 are separated by 209 nucleotides Xcc-8004.151.1 and Xcc-8004.153.1 overlap by 4 nucleotides
Xcc-8004.149.1: Xcc-8004.149.1 - putative; ORF located using Glimmer/Genemark, at 136,736 to 137,467
Xcc-8004.149.1
Xcc-8004.150.1: Xcc-8004.150.1 - FIG01210552: hypothetical protein, at 137,593 to 137,976
Xcc-8004.150.1
Xcc-8004.151.1: Xcc-8004.151.1 - FIG01211308: hypothetical protein, at 138,186 to 138,569
Xcc-8004.151.1
Xcc-8004.153.1: Xcc-8004.153.1 - Transcriptional regulator, at 138,566 to 141,979
Xcc-8004.153.1
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 136.710 kb on - strand at 136.736 kb on - strand at 136.736 kb on - strand at 136.736 kb on - strand at 136.799 kb on + strand at 136.799 kb on + strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.800 kb on - strand at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.830 kb on + strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.831 kb on - strand, within Xcc-8004.149.1 at 136.934 kb on - strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.954 kb on + strand, within Xcc-8004.149.1 at 136.955 kb on - strand, within Xcc-8004.149.1 at 136.955 kb on - strand, within Xcc-8004.149.1 at 137.117 kb on + strand, within Xcc-8004.149.1 at 137.118 kb on - strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.330 kb on + strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.331 kb on - strand, within Xcc-8004.149.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.703 kb on + strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 137.704 kb on - strand, within Xcc-8004.150.1 at 138.101 kb on + strand at 138.101 kb on + strand at 138.101 kb on + strand at 138.101 kb on + strand at 138.102 kb on - strand at 138.188 kb on - strand at 138.188 kb on - strand at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.337 kb on + strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.338 kb on - strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.424 kb on + strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.425 kb on - strand, within Xcc-8004.151.1 at 138.447 kb on + strand, within Xcc-8004.151.1 at 138.448 kb on - strand, within Xcc-8004.151.1 at 138.484 kb on + strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.485 kb on - strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.490 kb on + strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.491 kb on - strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.526 kb on + strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.527 kb on - strand, within Xcc-8004.151.1 at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.600 kb on + strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.601 kb on - strand at 138.639 kb on + strand at 138.639 kb on + strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.640 kb on - strand at 138.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 136,710 - -1.9 136,736 - +0.4 136,736 - +1.2 136,736 - -1.2 136,799 + -0.0 136,799 + +0.1 136,800 - +0.3 136,800 - +0.4 136,800 - -0.2 136,800 - +0.3 136,800 - -1.8 136,800 - -0.9 136,800 - +0.0 136,800 - -0.4 136,830 + Xcc-8004.149.1 0.13 -0.0 136,830 + Xcc-8004.149.1 0.13 -0.4 136,830 + Xcc-8004.149.1 0.13 +2.6 136,830 + Xcc-8004.149.1 0.13 -0.4 136,830 + Xcc-8004.149.1 0.13 +0.2 136,830 + Xcc-8004.149.1 0.13 -0.4 136,831 - Xcc-8004.149.1 0.13 +0.5 136,831 - Xcc-8004.149.1 0.13 +0.0 136,831 - Xcc-8004.149.1 0.13 -0.4 136,831 - Xcc-8004.149.1 0.13 -0.4 136,831 - Xcc-8004.149.1 0.13 +1.1 136,831 - Xcc-8004.149.1 0.13 +0.1 136,831 - Xcc-8004.149.1 0.13 +0.7 136,831 - Xcc-8004.149.1 0.13 -0.8 136,934 - Xcc-8004.149.1 0.27 -0.3 136,954 + Xcc-8004.149.1 0.30 -0.6 136,954 + Xcc-8004.149.1 0.30 +0.3 136,954 + Xcc-8004.149.1 0.30 +0.6 136,954 + Xcc-8004.149.1 0.30 +2.3 136,955 - Xcc-8004.149.1 0.30 -0.7 136,955 - Xcc-8004.149.1 0.30 -0.1 137,117 + Xcc-8004.149.1 0.52 -0.8 137,118 - Xcc-8004.149.1 0.52 -0.9 137,330 + Xcc-8004.149.1 0.81 -0.2 137,330 + Xcc-8004.149.1 0.81 +0.9 137,330 + Xcc-8004.149.1 0.81 -1.2 137,330 + Xcc-8004.149.1 0.81 -0.2 137,331 - Xcc-8004.149.1 0.81 -0.8 137,331 - Xcc-8004.149.1 0.81 +0.3 137,331 - Xcc-8004.149.1 0.81 -0.4 137,703 + Xcc-8004.150.1 0.29 +1.2 137,703 + Xcc-8004.150.1 0.29 +0.3 137,703 + Xcc-8004.150.1 0.29 -0.6 137,703 + Xcc-8004.150.1 0.29 -1.2 137,703 + Xcc-8004.150.1 0.29 -0.6 137,703 + Xcc-8004.150.1 0.29 +0.3 137,703 + Xcc-8004.150.1 0.29 -0.3 137,703 + Xcc-8004.150.1 0.29 +1.5 137,703 + Xcc-8004.150.1 0.29 +0.5 137,703 + Xcc-8004.150.1 0.29 +0.1 137,703 + Xcc-8004.150.1 0.29 -0.5 137,704 - Xcc-8004.150.1 0.29 -0.8 137,704 - Xcc-8004.150.1 0.29 -0.6 137,704 - Xcc-8004.150.1 0.29 +0.4 137,704 - Xcc-8004.150.1 0.29 -0.2 137,704 - Xcc-8004.150.1 0.29 +0.1 137,704 - Xcc-8004.150.1 0.29 -1.1 137,704 - Xcc-8004.150.1 0.29 -1.3 137,704 - Xcc-8004.150.1 0.29 +2.6 137,704 - Xcc-8004.150.1 0.29 -1.6 137,704 - Xcc-8004.150.1 0.29 -0.8 137,704 - Xcc-8004.150.1 0.29 +0.6 138,101 + +0.2 138,101 + +0.1 138,101 + +0.3 138,101 + +0.8 138,102 - -0.0 138,188 - -1.1 138,188 - +0.6 138,337 + Xcc-8004.151.1 0.39 +0.6 138,337 + Xcc-8004.151.1 0.39 -0.1 138,337 + Xcc-8004.151.1 0.39 +0.6 138,337 + Xcc-8004.151.1 0.39 -0.4 138,337 + Xcc-8004.151.1 0.39 +2.2 138,337 + Xcc-8004.151.1 0.39 -0.4 138,337 + Xcc-8004.151.1 0.39 +1.6 138,338 - Xcc-8004.151.1 0.40 +0.4 138,338 - Xcc-8004.151.1 0.40 +0.5 138,338 - Xcc-8004.151.1 0.40 +0.8 138,424 + Xcc-8004.151.1 0.62 -2.0 138,424 + Xcc-8004.151.1 0.62 -0.5 138,424 + Xcc-8004.151.1 0.62 +0.0 138,424 + Xcc-8004.151.1 0.62 -2.8 138,424 + Xcc-8004.151.1 0.62 -2.3 138,425 - Xcc-8004.151.1 0.62 -0.9 138,425 - Xcc-8004.151.1 0.62 +0.1 138,425 - Xcc-8004.151.1 0.62 -0.3 138,447 + Xcc-8004.151.1 0.68 +0.8 138,448 - Xcc-8004.151.1 0.68 -0.2 138,484 + Xcc-8004.151.1 0.78 +0.4 138,485 - Xcc-8004.151.1 0.78 +0.3 138,485 - Xcc-8004.151.1 0.78 +0.8 138,485 - Xcc-8004.151.1 0.78 -1.1 138,485 - Xcc-8004.151.1 0.78 +0.5 138,485 - Xcc-8004.151.1 0.78 -2.4 138,485 - Xcc-8004.151.1 0.78 +0.0 138,490 + Xcc-8004.151.1 0.79 +0.6 138,490 + Xcc-8004.151.1 0.79 -0.5 138,490 + Xcc-8004.151.1 0.79 +1.8 138,490 + Xcc-8004.151.1 0.79 +0.5 138,490 + Xcc-8004.151.1 0.79 +0.1 138,490 + Xcc-8004.151.1 0.79 -0.9 138,490 + Xcc-8004.151.1 0.79 +0.3 138,490 + Xcc-8004.151.1 0.79 -2.2 138,490 + Xcc-8004.151.1 0.79 -1.8 138,490 + Xcc-8004.151.1 0.79 +0.3 138,490 + Xcc-8004.151.1 0.79 -0.9 138,490 + Xcc-8004.151.1 0.79 +0.3 138,490 + Xcc-8004.151.1 0.79 +0.1 138,490 + Xcc-8004.151.1 0.79 -0.0 138,490 + Xcc-8004.151.1 0.79 -0.7 138,491 - Xcc-8004.151.1 0.79 +0.0 138,491 - Xcc-8004.151.1 0.79 +0.1 138,491 - Xcc-8004.151.1 0.79 +0.8 138,491 - Xcc-8004.151.1 0.79 +0.4 138,491 - Xcc-8004.151.1 0.79 +0.8 138,491 - Xcc-8004.151.1 0.79 +0.6 138,491 - Xcc-8004.151.1 0.79 -0.4 138,491 - Xcc-8004.151.1 0.79 -1.3 138,526 + Xcc-8004.151.1 0.89 +0.7 138,526 + Xcc-8004.151.1 0.89 -0.6 138,526 + Xcc-8004.151.1 0.89 +0.0 138,526 + Xcc-8004.151.1 0.89 -0.4 138,526 + Xcc-8004.151.1 0.89 -1.3 138,526 + Xcc-8004.151.1 0.89 +0.6 138,526 + Xcc-8004.151.1 0.89 +0.7 138,526 + Xcc-8004.151.1 0.89 +0.0 138,526 + Xcc-8004.151.1 0.89 +0.9 138,527 - Xcc-8004.151.1 0.89 +0.5 138,527 - Xcc-8004.151.1 0.89 -0.1 138,527 - Xcc-8004.151.1 0.89 -0.0 138,527 - Xcc-8004.151.1 0.89 -0.3 138,600 + -0.2 138,600 + +0.9 138,600 + +0.7 138,600 + +0.8 138,600 + +1.7 138,600 + -0.2 138,601 - -1.1 138,601 - -2.1 138,601 - +4.0 138,601 - +1.3 138,601 - +0.1 138,601 - +0.1 138,601 - -2.0 138,601 - -0.7 138,639 + -0.0 138,639 + +0.7 138,640 - -0.4 138,640 - +2.3 138,640 - +0.3 138,640 - +0.2 138,640 - +2.0 138,853 + -0.7
Or see this region's nucleotide sequence