Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1490.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1489.1 and Xcc-8004.1490.1 are separated by 86 nucleotidesXcc-8004.1490.1 and Xcc-8004.1491.1 are separated by 75 nucleotides Xcc-8004.1489.1: Xcc-8004.1489.1 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I, at 1,418,360 to 1,420,672 Xcc-8004.1489.1 Xcc-8004.1490.1: Xcc-8004.1490.1 - FIG01211536: hypothetical protein, at 1,420,759 to 1,422,273 Xcc-8004.1490.1 Xcc-8004.1491.1: Xcc-8004.1491.1 - Glycosyltransferase, at 1,422,349 to 1,424,451 Xcc-8004.1491.1 Position (kb) 1420 1421 1422 1423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1419.827 kb on + strand, within Xcc-8004.1489.1at 1419.827 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.094 kb on + strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.095 kb on - strand, within Xcc-8004.1489.1at 1420.237 kb on + strand, within Xcc-8004.1489.1at 1420.238 kb on - strand, within Xcc-8004.1489.1at 1420.598 kb on + strandat 1420.598 kb on + strandat 1420.598 kb on + strandat 1420.599 kb on - strandat 1420.599 kb on - strandat 1420.703 kb on - strandat 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.305 kb on + strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.306 kb on - strand, within Xcc-8004.1490.1at 1421.455 kb on + strand, within Xcc-8004.1490.1at 1421.497 kb on + strand, within Xcc-8004.1490.1at 1421.651 kb on - strand, within Xcc-8004.1490.1at 1421.914 kb on + strand, within Xcc-8004.1490.1at 1421.924 kb on + strand, within Xcc-8004.1490.1at 1421.925 kb on - strand, within Xcc-8004.1490.1at 1422.020 kb on + strand, within Xcc-8004.1490.1at 1422.020 kb on + strand, within Xcc-8004.1490.1at 1422.021 kb on - strand, within Xcc-8004.1490.1at 1422.316 kb on + strandat 1422.316 kb on + strandat 1422.317 kb on - strandat 1422.317 kb on - strandat 1422.317 kb on - strandat 1422.360 kb on + strandat 1422.566 kb on - strand, within Xcc-8004.1491.1at 1422.645 kb on + strand, within Xcc-8004.1491.1at 1422.646 kb on - strand, within Xcc-8004.1491.1at 1422.646 kb on - strand, within Xcc-8004.1491.1at 1422.662 kb on + strand, within Xcc-8004.1491.1at 1422.662 kb on + strand, within Xcc-8004.1491.1at 1422.662 kb on + strand, within Xcc-8004.1491.1at 1422.662 kb on + strand, within Xcc-8004.1491.1at 1422.662 kb on + strand, within Xcc-8004.1491.1at 1422.663 kb on - strand, within Xcc-8004.1491.1at 1422.663 kb on - strand, within Xcc-8004.1491.1at 1422.663 kb on - strand, within Xcc-8004.1491.1at 1422.663 kb on - strand, within Xcc-8004.1491.1at 1422.721 kb on + strand, within Xcc-8004.1491.1at 1422.721 kb on + strand, within Xcc-8004.1491.1at 1422.721 kb on + strand, within Xcc-8004.1491.1at 1423.100 kb on + strand, within Xcc-8004.1491.1at 1423.100 kb on + strand, within Xcc-8004.1491.1at 1423.100 kb on + strand, within Xcc-8004.1491.1at 1423.100 kb on + strand, within Xcc-8004.1491.1at 1423.100 kb on + strand, within Xcc-8004.1491.1at 1423.101 kb on - strand, within Xcc-8004.1491.1at 1423.101 kb on - strand, within Xcc-8004.1491.1at 1423.262 kb on + strand, within Xcc-8004.1491.1at 1423.262 kb on + strand, within Xcc-8004.1491.1at 1423.262 kb on + strand, within Xcc-8004.1491.1at 1423.263 kb on - strand, within Xcc-8004.1491.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,419,827 + Xcc-8004.1489.1 0.63 +0.3
1,419,827 + Xcc-8004.1489.1 0.63 +1.0
1,420,094 + Xcc-8004.1489.1 0.75 -1.3
1,420,094 + Xcc-8004.1489.1 0.75 -0.7
1,420,094 + Xcc-8004.1489.1 0.75 -1.9
1,420,094 + Xcc-8004.1489.1 0.75 -0.1
1,420,094 + Xcc-8004.1489.1 0.75 +1.1
1,420,094 + Xcc-8004.1489.1 0.75 +0.1
1,420,094 + Xcc-8004.1489.1 0.75 -0.1
1,420,094 + Xcc-8004.1489.1 0.75 +1.4
1,420,095 - Xcc-8004.1489.1 0.75 -1.2
1,420,095 - Xcc-8004.1489.1 0.75 -1.6
1,420,095 - Xcc-8004.1489.1 0.75 -1.0
1,420,095 - Xcc-8004.1489.1 0.75 -3.2
1,420,095 - Xcc-8004.1489.1 0.75 +2.0
1,420,095 - Xcc-8004.1489.1 0.75 +0.3
1,420,095 - Xcc-8004.1489.1 0.75 +0.5
1,420,095 - Xcc-8004.1489.1 0.75 -0.5
1,420,095 - Xcc-8004.1489.1 0.75 -0.3
1,420,095 - Xcc-8004.1489.1 0.75 +0.6
1,420,095 - Xcc-8004.1489.1 0.75 +0.3
1,420,095 - Xcc-8004.1489.1 0.75 -0.9
1,420,095 - Xcc-8004.1489.1 0.75 +0.2
1,420,095 - Xcc-8004.1489.1 0.75 +0.6
1,420,237 + Xcc-8004.1489.1 0.81 +1.4
1,420,238 - Xcc-8004.1489.1 0.81 +0.5
1,420,598 + -0.3
1,420,598 + -0.2
1,420,598 + +0.6
1,420,599 - -0.0
1,420,599 - +2.6
1,420,703 - +0.2
1,421,305 + Xcc-8004.1490.1 0.36 +0.2
1,421,305 + Xcc-8004.1490.1 0.36 +0.1
1,421,305 + Xcc-8004.1490.1 0.36 -0.6
1,421,306 - Xcc-8004.1490.1 0.36 +0.9
1,421,306 - Xcc-8004.1490.1 0.36 -1.2
1,421,306 - Xcc-8004.1490.1 0.36 -1.3
1,421,455 + Xcc-8004.1490.1 0.46 -1.3
1,421,497 + Xcc-8004.1490.1 0.49 -2.5
1,421,651 - Xcc-8004.1490.1 0.59 -1.1
1,421,914 + Xcc-8004.1490.1 0.76 +0.1
1,421,924 + Xcc-8004.1490.1 0.77 +0.3
1,421,925 - Xcc-8004.1490.1 0.77 -0.9
1,422,020 + Xcc-8004.1490.1 0.83 -0.6
1,422,020 + Xcc-8004.1490.1 0.83 -0.5
1,422,021 - Xcc-8004.1490.1 0.83 +0.3
1,422,316 + +0.2
1,422,316 + -1.0
1,422,317 - -0.1
1,422,317 - +0.7
1,422,317 - -0.3
1,422,360 + -0.2
1,422,566 - Xcc-8004.1491.1 0.10 +1.4
1,422,645 + Xcc-8004.1491.1 0.14 -1.8
1,422,646 - Xcc-8004.1491.1 0.14 -1.4
1,422,646 - Xcc-8004.1491.1 0.14 -0.0
1,422,662 + Xcc-8004.1491.1 0.15 -2.9
1,422,662 + Xcc-8004.1491.1 0.15 -2.3
1,422,662 + Xcc-8004.1491.1 0.15 -3.9
1,422,662 + Xcc-8004.1491.1 0.15 -1.6
1,422,662 + Xcc-8004.1491.1 0.15 -1.5
1,422,663 - Xcc-8004.1491.1 0.15 -0.4
1,422,663 - Xcc-8004.1491.1 0.15 -2.9
1,422,663 - Xcc-8004.1491.1 0.15 -0.5
1,422,663 - Xcc-8004.1491.1 0.15 -1.9
1,422,721 + Xcc-8004.1491.1 0.18 -2.5
1,422,721 + Xcc-8004.1491.1 0.18 -1.2
1,422,721 + Xcc-8004.1491.1 0.18 -1.3
1,423,100 + Xcc-8004.1491.1 0.36 -1.4
1,423,100 + Xcc-8004.1491.1 0.36 -0.5
1,423,100 + Xcc-8004.1491.1 0.36 -0.2
1,423,100 + Xcc-8004.1491.1 0.36 -0.9
1,423,100 + Xcc-8004.1491.1 0.36 -0.2
1,423,101 - Xcc-8004.1491.1 0.36 -1.6
1,423,101 - Xcc-8004.1491.1 0.36 -2.1
1,423,262 + Xcc-8004.1491.1 0.43 -0.6
1,423,262 + Xcc-8004.1491.1 0.43 -1.1
1,423,262 + Xcc-8004.1491.1 0.43 -1.7
1,423,263 - Xcc-8004.1491.1 0.43 -1.1

Or see this region's nucleotide sequence