Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1436.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,374,472	+				-1.7
1,374,472	+				-1.2
1,374,472	+				-0.8
1,374,472	+				-1.7
1,374,472	+				-2.3
1,374,472	+				-0.8
1,374,472	+				-2.2
1,374,473	-				-1.5
1,374,505	+				+0.6
1,374,506	-				-2.4
1,374,597	-				-0.2
1,375,131	+				-0.3
1,375,304	+				-1.0
1,375,304	+				-0.7
1,375,305	-				-0.6
1,375,380	-		Xcc-8004.1436.1	0.18	-1.2
1,375,380	-		Xcc-8004.1436.1	0.18	-0.7
1,375,380	-		Xcc-8004.1436.1	0.18	-0.2
1,375,424	+		Xcc-8004.1436.1	0.26	+0.6
1,375,454	+		Xcc-8004.1436.1	0.31	+0.3
1,375,758	-		Xcc-8004.1436.1	0.83	-0.7
1,375,857	-				-0.5
1,375,933	+				+1.6
1,375,984	+				+0.6
1,376,175	+				-1.1
1,376,175	+				-0.7
1,376,176	-				-0.3
1,376,176	-				+0.6
1,376,205	+				+0.4
1,376,290	-		Xcc-8004.1437.1	0.12	+1.6
1,376,290	-		Xcc-8004.1437.1	0.12	+0.6
1,376,391	+		Xcc-8004.1437.1	0.17	-1.0
1,376,391	+		Xcc-8004.1437.1	0.17	-0.6
1,376,392	-		Xcc-8004.1437.1	0.18	-0.2
1,376,392	-		Xcc-8004.1437.1	0.18	-0.6
1,376,446	+		Xcc-8004.1437.1	0.20	+1.0
1,376,446	+		Xcc-8004.1437.1	0.20	-0.6
1,376,446	+		Xcc-8004.1437.1	0.20	-1.8
1,376,447	-		Xcc-8004.1437.1	0.20	+0.3
1,376,788	-		Xcc-8004.1437.1	0.38	+1.9