Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1401.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1399.1 and Xcc-8004.1400.1 overlap by 4 nucleotidesXcc-8004.1400.1 and Xcc-8004.1401.1 are separated by 19 nucleotidesXcc-8004.1401.1 and Xcc-8004.1402.1 overlap by 79 nucleotides Xcc-8004.1399.1: Xcc-8004.1399.1 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 1,327,428 to 1,327,997 Xcc-8004.1399.1 Xcc-8004.1400.1: Xcc-8004.1400.1 - Cobalamin synthase (EC 2.7.8.26), at 1,327,994 to 1,328,728 Xcc-8004.1400.1 Xcc-8004.1401.1: Xcc-8004.1401.1 - hypothetical protein, at 1,328,748 to 1,329,728 Xcc-8004.1401.1 Xcc-8004.1402.1: Xcc-8004.1402.1 - Vibrioferrin decarboxylase protein PvsE, at 1,329,650 to 1,330,933 Xcc-8004.1402.1 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.718 kb on - strandat 1328.727 kb on - strandat 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.645 kb on + strandat 1329.645 kb on + strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.652 kb on - strandat 1329.652 kb on - strandat 1329.790 kb on + strand, within Xcc-8004.1402.1at 1329.791 kb on - strand, within Xcc-8004.1402.1at 1329.791 kb on - strand, within Xcc-8004.1402.1at 1329.801 kb on + strand, within Xcc-8004.1402.1at 1329.802 kb on - strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.092 kb on + strand, within Xcc-8004.1402.1at 1330.093 kb on - strand, within Xcc-8004.1402.1at 1330.200 kb on + strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.284 kb on + strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.380 kb on - strand, within Xcc-8004.1402.1at 1330.723 kb on - strand, within Xcc-8004.1402.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,327,830 + Xcc-8004.1399.1 0.71 +0.3
1,327,830 + Xcc-8004.1399.1 0.71 +0.3
1,327,830 + Xcc-8004.1399.1 0.71 -0.1
1,327,830 + Xcc-8004.1399.1 0.71 +0.3
1,327,830 + Xcc-8004.1399.1 0.71 +1.6
1,327,830 + Xcc-8004.1399.1 0.71 +0.8
1,327,831 - Xcc-8004.1399.1 0.71 -0.6
1,327,831 - Xcc-8004.1399.1 0.71 +1.2
1,327,831 - Xcc-8004.1399.1 0.71 -0.5
1,328,462 + Xcc-8004.1400.1 0.64 -0.4
1,328,462 + Xcc-8004.1400.1 0.64 +0.0
1,328,462 + Xcc-8004.1400.1 0.64 +0.6
1,328,717 + +0.8
1,328,717 + +0.7
1,328,717 + -1.0
1,328,717 + -1.1
1,328,718 - +0.9
1,328,727 - -0.3
1,329,094 + Xcc-8004.1401.1 0.35 +1.0
1,329,094 + Xcc-8004.1401.1 0.35 -1.2
1,329,111 + Xcc-8004.1401.1 0.37 +1.4
1,329,111 + Xcc-8004.1401.1 0.37 +0.6
1,329,558 + Xcc-8004.1401.1 0.83 -0.5
1,329,558 + Xcc-8004.1401.1 0.83 -0.4
1,329,559 - Xcc-8004.1401.1 0.83 -0.2
1,329,559 - Xcc-8004.1401.1 0.83 -0.6
1,329,559 - Xcc-8004.1401.1 0.83 +1.3
1,329,645 + +0.8
1,329,645 + +0.9
1,329,646 - -1.6
1,329,646 - +0.7
1,329,646 - -1.8
1,329,652 - -0.7
1,329,652 - +0.4
1,329,790 + Xcc-8004.1402.1 0.11 -1.3
1,329,791 - Xcc-8004.1402.1 0.11 -0.2
1,329,791 - Xcc-8004.1402.1 0.11 +0.8
1,329,801 + Xcc-8004.1402.1 0.12 -1.9
1,329,802 - Xcc-8004.1402.1 0.12 +0.1
1,329,872 + Xcc-8004.1402.1 0.17 +1.2
1,329,872 + Xcc-8004.1402.1 0.17 +3.6
1,329,872 + Xcc-8004.1402.1 0.17 -0.1
1,329,872 + Xcc-8004.1402.1 0.17 -0.1
1,329,872 + Xcc-8004.1402.1 0.17 -0.6
1,329,873 - Xcc-8004.1402.1 0.17 +0.9
1,329,873 - Xcc-8004.1402.1 0.17 -0.9
1,329,873 - Xcc-8004.1402.1 0.17 +0.3
1,329,873 - Xcc-8004.1402.1 0.17 +0.1
1,329,873 - Xcc-8004.1402.1 0.17 -1.0
1,330,068 + Xcc-8004.1402.1 0.33 -0.3
1,330,068 + Xcc-8004.1402.1 0.33 +0.2
1,330,092 + Xcc-8004.1402.1 0.34 +1.4
1,330,093 - Xcc-8004.1402.1 0.35 -0.4
1,330,200 + Xcc-8004.1402.1 0.43 -0.7
1,330,201 - Xcc-8004.1402.1 0.43 -0.3
1,330,201 - Xcc-8004.1402.1 0.43 +1.6
1,330,284 + Xcc-8004.1402.1 0.49 -0.5
1,330,285 - Xcc-8004.1402.1 0.49 +0.1
1,330,285 - Xcc-8004.1402.1 0.49 -0.9
1,330,380 - Xcc-8004.1402.1 0.57 -1.2
1,330,723 - Xcc-8004.1402.1 0.84 +1.0

Or see this region's nucleotide sequence