Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1374.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1373.1 and Xcc-8004.1374.1 are separated by 204 nucleotidesXcc-8004.1374.1 and Xcc-8004.1375.1 are separated by 23 nucleotidesXcc-8004.1375.1 and Xcc-8004.1376.1 are separated by 89 nucleotides Xcc-8004.1373.1: Xcc-8004.1373.1 - ferric enterobactin receptor, at 1,301,163 to 1,303,598 Xcc-8004.1373.1 Xcc-8004.1374.1: Xcc-8004.1374.1 - Lipoprotein, putative, at 1,303,803 to 1,304,276 Xcc-8004.1374.1 Xcc-8004.1375.1: Xcc-8004.1375.1 - FIG01210071: hypothetical protein, at 1,304,300 to 1,305,172 Xcc-8004.1375.1 Xcc-8004.1376.1: Xcc-8004.1376.1 - FIG01212004: hypothetical protein, at 1,305,262 to 1,306,911 Xcc-8004.1376.1 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1302.805 kb on + strand, within Xcc-8004.1373.1at 1302.805 kb on + strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.806 kb on - strand, within Xcc-8004.1373.1at 1302.971 kb on - strand, within Xcc-8004.1373.1at 1302.971 kb on - strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.024 kb on + strand, within Xcc-8004.1373.1at 1303.025 kb on - strand, within Xcc-8004.1373.1at 1303.111 kb on + strand, within Xcc-8004.1373.1at 1303.235 kb on + strand, within Xcc-8004.1373.1at 1303.235 kb on + strand, within Xcc-8004.1373.1at 1303.236 kb on - strand, within Xcc-8004.1373.1at 1303.613 kb on + strandat 1303.614 kb on - strandat 1303.614 kb on - strandat 1303.702 kb on - strandat 1303.704 kb on + strandat 1303.957 kb on - strand, within Xcc-8004.1374.1at 1303.957 kb on - strand, within Xcc-8004.1374.1at 1304.091 kb on + strand, within Xcc-8004.1374.1at 1304.555 kb on + strand, within Xcc-8004.1375.1at 1304.555 kb on + strand, within Xcc-8004.1375.1at 1304.633 kb on + strand, within Xcc-8004.1375.1at 1304.633 kb on + strand, within Xcc-8004.1375.1at 1304.634 kb on - strand, within Xcc-8004.1375.1at 1304.784 kb on - strand, within Xcc-8004.1375.1at 1304.784 kb on - strand, within Xcc-8004.1375.1at 1304.790 kb on - strand, within Xcc-8004.1375.1at 1304.790 kb on - strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.810 kb on + strand, within Xcc-8004.1375.1at 1304.811 kb on - strand, within Xcc-8004.1375.1at 1304.811 kb on - strand, within Xcc-8004.1375.1at 1304.811 kb on - strand, within Xcc-8004.1375.1at 1304.811 kb on - strand, within Xcc-8004.1375.1at 1304.811 kb on - strand, within Xcc-8004.1375.1at 1305.008 kb on + strand, within Xcc-8004.1375.1at 1305.008 kb on + strand, within Xcc-8004.1375.1at 1305.008 kb on + strand, within Xcc-8004.1375.1at 1305.009 kb on - strand, within Xcc-8004.1375.1at 1305.009 kb on - strand, within Xcc-8004.1375.1at 1305.042 kb on - strand, within Xcc-8004.1375.1at 1305.042 kb on - strand, within Xcc-8004.1375.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,302,805 + Xcc-8004.1373.1 0.67 +0.1
1,302,805 + Xcc-8004.1373.1 0.67 +0.5
1,302,806 - Xcc-8004.1373.1 0.67 -1.1
1,302,806 - Xcc-8004.1373.1 0.67 +0.3
1,302,806 - Xcc-8004.1373.1 0.67 -1.1
1,302,806 - Xcc-8004.1373.1 0.67 +0.3
1,302,806 - Xcc-8004.1373.1 0.67 -2.8
1,302,971 - Xcc-8004.1373.1 0.74 +0.6
1,302,971 - Xcc-8004.1373.1 0.74 +0.3
1,303,024 + Xcc-8004.1373.1 0.76 +0.5
1,303,024 + Xcc-8004.1373.1 0.76 -0.3
1,303,024 + Xcc-8004.1373.1 0.76 +0.5
1,303,025 - Xcc-8004.1373.1 0.76 -0.3
1,303,111 + Xcc-8004.1373.1 0.80 +0.7
1,303,235 + Xcc-8004.1373.1 0.85 -0.2
1,303,235 + Xcc-8004.1373.1 0.85 -0.7
1,303,236 - Xcc-8004.1373.1 0.85 -1.7
1,303,613 + -0.3
1,303,614 - -0.7
1,303,614 - -0.7
1,303,702 - +0.0
1,303,704 + +0.4
1,303,957 - Xcc-8004.1374.1 0.32 -0.6
1,303,957 - Xcc-8004.1374.1 0.32 -0.0
1,304,091 + Xcc-8004.1374.1 0.61 -1.2
1,304,555 + Xcc-8004.1375.1 0.29 +2.6
1,304,555 + Xcc-8004.1375.1 0.29 -0.3
1,304,633 + Xcc-8004.1375.1 0.38 -0.3
1,304,633 + Xcc-8004.1375.1 0.38 +0.2
1,304,634 - Xcc-8004.1375.1 0.38 +0.1
1,304,784 - Xcc-8004.1375.1 0.55 +1.6
1,304,784 - Xcc-8004.1375.1 0.55 +0.2
1,304,790 - Xcc-8004.1375.1 0.56 +0.4
1,304,790 - Xcc-8004.1375.1 0.56 -0.0
1,304,810 + Xcc-8004.1375.1 0.58 -1.7
1,304,810 + Xcc-8004.1375.1 0.58 +0.4
1,304,810 + Xcc-8004.1375.1 0.58 +0.2
1,304,810 + Xcc-8004.1375.1 0.58 -0.0
1,304,810 + Xcc-8004.1375.1 0.58 +0.6
1,304,810 + Xcc-8004.1375.1 0.58 -1.4
1,304,810 + Xcc-8004.1375.1 0.58 +0.2
1,304,810 + Xcc-8004.1375.1 0.58 +0.4
1,304,810 + Xcc-8004.1375.1 0.58 -0.7
1,304,810 + Xcc-8004.1375.1 0.58 -2.2
1,304,810 + Xcc-8004.1375.1 0.58 -0.2
1,304,810 + Xcc-8004.1375.1 0.58 -1.7
1,304,810 + Xcc-8004.1375.1 0.58 +0.1
1,304,810 + Xcc-8004.1375.1 0.58 +0.6
1,304,810 + Xcc-8004.1375.1 0.58 +0.3
1,304,810 + Xcc-8004.1375.1 0.58 +1.8
1,304,810 + Xcc-8004.1375.1 0.58 +1.3
1,304,811 - Xcc-8004.1375.1 0.59 -0.9
1,304,811 - Xcc-8004.1375.1 0.59 +0.1
1,304,811 - Xcc-8004.1375.1 0.59 -0.1
1,304,811 - Xcc-8004.1375.1 0.59 -0.7
1,304,811 - Xcc-8004.1375.1 0.59 +0.0
1,305,008 + Xcc-8004.1375.1 0.81 -1.9
1,305,008 + Xcc-8004.1375.1 0.81 +0.7
1,305,008 + Xcc-8004.1375.1 0.81 -0.4
1,305,009 - Xcc-8004.1375.1 0.81 -3.1
1,305,009 - Xcc-8004.1375.1 0.81 -0.5
1,305,042 - Xcc-8004.1375.1 0.85 -0.8
1,305,042 - Xcc-8004.1375.1 0.85 +0.0

Or see this region's nucleotide sequence