Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1372.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1371.1 and Xcc-8004.1372.1 are separated by 49 nucleotidesXcc-8004.1372.1 and Xcc-8004.1373.1 are separated by 694 nucleotides Xcc-8004.1371.1: Xcc-8004.1371.1 - Glucoamylase (EC 3.2.1.3), at 1,297,882 to 1,299,660 Xcc-8004.1371.1 Xcc-8004.1372.1: Xcc-8004.1372.1 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 1,299,710 to 1,300,468 Xcc-8004.1372.1 Xcc-8004.1373.1: Xcc-8004.1373.1 - ferric enterobactin receptor, at 1,301,163 to 1,303,598 Xcc-8004.1373.1 Position (kb) 1299 1300 1301Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1298.792 kb on + strand, within Xcc-8004.1371.1at 1298.792 kb on + strand, within Xcc-8004.1371.1at 1298.793 kb on - strand, within Xcc-8004.1371.1at 1298.793 kb on - strand, within Xcc-8004.1371.1at 1298.960 kb on + strand, within Xcc-8004.1371.1at 1299.029 kb on + strand, within Xcc-8004.1371.1at 1299.029 kb on + strand, within Xcc-8004.1371.1at 1299.030 kb on - strand, within Xcc-8004.1371.1at 1299.051 kb on - strand, within Xcc-8004.1371.1at 1299.051 kb on - strand, within Xcc-8004.1371.1at 1299.079 kb on + strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.084 kb on - strand, within Xcc-8004.1371.1at 1299.084 kb on - strand, within Xcc-8004.1371.1at 1299.253 kb on - strand, within Xcc-8004.1371.1at 1299.253 kb on - strand, within Xcc-8004.1371.1at 1299.339 kb on + strand, within Xcc-8004.1371.1at 1299.356 kb on + strand, within Xcc-8004.1371.1at 1299.357 kb on - strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.670 kb on - strandat 1299.981 kb on - strand, within Xcc-8004.1372.1at 1299.981 kb on - strand, within Xcc-8004.1372.1at 1300.028 kb on + strand, within Xcc-8004.1372.1at 1300.029 kb on - strand, within Xcc-8004.1372.1at 1300.029 kb on - strand, within Xcc-8004.1372.1at 1300.135 kb on + strand, within Xcc-8004.1372.1at 1300.136 kb on - strand, within Xcc-8004.1372.1at 1300.136 kb on - strand, within Xcc-8004.1372.1at 1300.337 kb on + strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.475 kb on - strandat 1300.475 kb on - strandat 1300.496 kb on + strandat 1300.496 kb on + strandat 1300.497 kb on - strandat 1300.655 kb on + strandat 1300.808 kb on + strandat 1300.962 kb on + strandat 1301.105 kb on - strandat 1301.171 kb on + strandat 1301.173 kb on + strandat 1301.173 kb on + strandat 1301.173 kb on + strandat 1301.188 kb on + strandat 1301.189 kb on - strandat 1301.231 kb on - strandat 1301.249 kb on - strandat 1301.278 kb on + strandat 1301.279 kb on - strandat 1301.371 kb on + strandat 1301.371 kb on + strandat 1301.372 kb on - strandat 1301.372 kb on - strandat 1301.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,298,792 + Xcc-8004.1371.1 0.51 -0.5
1,298,792 + Xcc-8004.1371.1 0.51 +1.2
1,298,793 - Xcc-8004.1371.1 0.51 +0.6
1,298,793 - Xcc-8004.1371.1 0.51 -1.2
1,298,960 + Xcc-8004.1371.1 0.61 +0.7
1,299,029 + Xcc-8004.1371.1 0.64 -1.8
1,299,029 + Xcc-8004.1371.1 0.64 +0.3
1,299,030 - Xcc-8004.1371.1 0.65 +0.4
1,299,051 - Xcc-8004.1371.1 0.66 +0.7
1,299,051 - Xcc-8004.1371.1 0.66 -0.9
1,299,079 + Xcc-8004.1371.1 0.67 +0.2
1,299,080 - Xcc-8004.1371.1 0.67 -0.1
1,299,080 - Xcc-8004.1371.1 0.67 -0.4
1,299,080 - Xcc-8004.1371.1 0.67 -0.1
1,299,084 - Xcc-8004.1371.1 0.68 -0.4
1,299,084 - Xcc-8004.1371.1 0.68 -1.3
1,299,253 - Xcc-8004.1371.1 0.77 +0.5
1,299,253 - Xcc-8004.1371.1 0.77 -0.1
1,299,339 + Xcc-8004.1371.1 0.82 +0.3
1,299,356 + Xcc-8004.1371.1 0.83 -0.1
1,299,357 - Xcc-8004.1371.1 0.83 -0.4
1,299,461 + Xcc-8004.1371.1 0.89 -0.4
1,299,461 + Xcc-8004.1371.1 0.89 -1.5
1,299,461 + Xcc-8004.1371.1 0.89 +0.2
1,299,461 + Xcc-8004.1371.1 0.89 -0.5
1,299,461 + Xcc-8004.1371.1 0.89 +0.1
1,299,461 + Xcc-8004.1371.1 0.89 +0.6
1,299,462 - Xcc-8004.1371.1 0.89 +0.0
1,299,462 - Xcc-8004.1371.1 0.89 -0.6
1,299,462 - Xcc-8004.1371.1 0.89 -0.5
1,299,462 - Xcc-8004.1371.1 0.89 -0.5
1,299,462 - Xcc-8004.1371.1 0.89 +1.3
1,299,462 - Xcc-8004.1371.1 0.89 +0.0
1,299,670 - +0.1
1,299,981 - Xcc-8004.1372.1 0.36 +2.6
1,299,981 - Xcc-8004.1372.1 0.36 +2.6
1,300,028 + Xcc-8004.1372.1 0.42 -2.2
1,300,029 - Xcc-8004.1372.1 0.42 +2.6
1,300,029 - Xcc-8004.1372.1 0.42 +0.3
1,300,135 + Xcc-8004.1372.1 0.56 +0.0
1,300,136 - Xcc-8004.1372.1 0.56 -0.7
1,300,136 - Xcc-8004.1372.1 0.56 +2.6
1,300,337 + Xcc-8004.1372.1 0.83 +0.6
1,300,338 - Xcc-8004.1372.1 0.83 -1.5
1,300,338 - Xcc-8004.1372.1 0.83 -0.4
1,300,474 + -1.2
1,300,474 + -2.2
1,300,474 + -1.5
1,300,475 - +0.9
1,300,475 - +1.0
1,300,496 + -2.8
1,300,496 + -0.1
1,300,497 - +0.1
1,300,655 + -0.4
1,300,808 + -1.2
1,300,962 + +0.3
1,301,105 - -0.7
1,301,171 + -0.5
1,301,173 + -0.0
1,301,173 + +1.1
1,301,173 + -0.3
1,301,188 + -0.3
1,301,189 - -1.8
1,301,231 - +0.1
1,301,249 - +0.8
1,301,278 + +0.4
1,301,279 - -0.5
1,301,371 + -1.6
1,301,371 + -0.8
1,301,372 - -1.4
1,301,372 - +0.2
1,301,372 - +0.3

Or see this region's nucleotide sequence