Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1351.1 and Xcc-8004.1353.1 are separated by 418 nucleotides Xcc-8004.1353.1 and Xcc-8004.1354.1 are separated by 262 nucleotides
Xcc-8004.1351.1: Xcc-8004.1351.1 - Type IV fimbrial assembly, ATPase PilB, at 1,275,066 to 1,276,799
Xcc-8004.1351.1
Xcc-8004.1353.1: Xcc-8004.1353.1 - Type IV fimbriae expression regulatory protein PilR, at 1,277,218 to 1,278,558
Xcc-8004.1353.1
Xcc-8004.1354.1: Xcc-8004.1354.1 - Two-component sensor PilS, at 1,278,821 to 1,280,431
Xcc-8004.1354.1
Position (kb) 1277
1278
1279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1276.220 kb on + strand, within Xcc-8004.1351.1 at 1276.416 kb on + strand, within Xcc-8004.1351.1 at 1276.416 kb on + strand, within Xcc-8004.1351.1 at 1276.532 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.563 kb on + strand, within Xcc-8004.1351.1 at 1276.564 kb on - strand, within Xcc-8004.1351.1 at 1276.564 kb on - strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.599 kb on + strand, within Xcc-8004.1351.1 at 1276.600 kb on - strand, within Xcc-8004.1351.1 at 1276.600 kb on - strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.620 kb on + strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.621 kb on - strand, within Xcc-8004.1351.1 at 1276.854 kb on + strand at 1276.855 kb on - strand at 1276.855 kb on - strand at 1276.855 kb on - strand at 1276.862 kb on + strand at 1276.862 kb on + strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.863 kb on - strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.874 kb on + strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.875 kb on - strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.876 kb on + strand at 1276.877 kb on - strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.956 kb on + strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.957 kb on - strand at 1276.960 kb on + strand at 1276.960 kb on + strand at 1277.006 kb on + strand at 1277.007 kb on - strand at 1277.007 kb on - strand at 1277.069 kb on + strand at 1277.180 kb on + strand at 1277.180 kb on + strand at 1277.219 kb on + strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.220 kb on - strand at 1277.246 kb on + strand at 1277.246 kb on + strand at 1277.247 kb on - strand at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.354 kb on + strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.355 kb on - strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.558 kb on + strand, within Xcc-8004.1353.1 at 1277.559 kb on - strand, within Xcc-8004.1353.1 at 1277.559 kb on - strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.562 kb on + strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.563 kb on - strand, within Xcc-8004.1353.1 at 1277.715 kb on - strand, within Xcc-8004.1353.1 at 1277.715 kb on - strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.717 kb on + strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.718 kb on - strand, within Xcc-8004.1353.1 at 1277.973 kb on + strand, within Xcc-8004.1353.1 at 1277.973 kb on + strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1277.974 kb on - strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.116 kb on + strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.117 kb on - strand, within Xcc-8004.1353.1 at 1278.392 kb on + strand, within Xcc-8004.1353.1 at 1278.467 kb on + strand at 1278.624 kb on + strand at 1278.624 kb on + strand at 1278.651 kb on + strand at 1278.822 kb on + strand at 1278.822 kb on + strand at 1278.834 kb on - strand at 1278.851 kb on + strand at 1278.851 kb on + strand at 1278.851 kb on + strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.852 kb on - strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.939 kb on + strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.940 kb on - strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.975 kb on + strand at 1278.976 kb on - strand at 1278.976 kb on - strand at 1278.976 kb on - strand at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.110 kb on + strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.111 kb on - strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.127 kb on + strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.128 kb on - strand, within Xcc-8004.1354.1 at 1279.240 kb on - strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.428 kb on + strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1 at 1279.429 kb on - strand, within Xcc-8004.1354.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,276,220 + Xcc-8004.1351.1 0.67 +1.0 1,276,416 + Xcc-8004.1351.1 0.78 -1.6 1,276,416 + Xcc-8004.1351.1 0.78 -0.3 1,276,532 + Xcc-8004.1351.1 0.85 +0.1 1,276,563 + Xcc-8004.1351.1 0.86 -0.0 1,276,563 + Xcc-8004.1351.1 0.86 +0.2 1,276,563 + Xcc-8004.1351.1 0.86 -0.8 1,276,563 + Xcc-8004.1351.1 0.86 -0.1 1,276,563 + Xcc-8004.1351.1 0.86 -0.2 1,276,564 - Xcc-8004.1351.1 0.86 +0.0 1,276,564 - Xcc-8004.1351.1 0.86 +0.4 1,276,599 + Xcc-8004.1351.1 0.88 +0.7 1,276,599 + Xcc-8004.1351.1 0.88 +0.7 1,276,599 + Xcc-8004.1351.1 0.88 +0.6 1,276,599 + Xcc-8004.1351.1 0.88 -1.8 1,276,599 + Xcc-8004.1351.1 0.88 +0.5 1,276,600 - Xcc-8004.1351.1 0.88 +0.6 1,276,600 - Xcc-8004.1351.1 0.88 -0.1 1,276,620 + Xcc-8004.1351.1 0.90 -0.2 1,276,620 + Xcc-8004.1351.1 0.90 +0.3 1,276,620 + Xcc-8004.1351.1 0.90 -0.9 1,276,620 + Xcc-8004.1351.1 0.90 -1.8 1,276,620 + Xcc-8004.1351.1 0.90 +0.7 1,276,620 + Xcc-8004.1351.1 0.90 -0.2 1,276,620 + Xcc-8004.1351.1 0.90 +0.9 1,276,621 - Xcc-8004.1351.1 0.90 -0.3 1,276,621 - Xcc-8004.1351.1 0.90 +0.9 1,276,621 - Xcc-8004.1351.1 0.90 -0.0 1,276,854 + -0.8 1,276,855 - +1.2 1,276,855 - -1.6 1,276,855 - +1.6 1,276,862 + +0.1 1,276,862 + +0.2 1,276,863 - +0.1 1,276,863 - +0.2 1,276,863 - -0.5 1,276,863 - +1.3 1,276,874 + -1.3 1,276,874 + -0.2 1,276,874 + -1.1 1,276,874 + -0.6 1,276,874 + -0.2 1,276,874 + +0.1 1,276,874 + +0.4 1,276,875 - -0.5 1,276,875 - -0.1 1,276,875 - -0.8 1,276,875 - -0.4 1,276,875 - +0.6 1,276,875 - -0.3 1,276,875 - -1.6 1,276,876 + -0.1 1,276,876 + +0.6 1,276,876 + +0.0 1,276,876 + +2.0 1,276,876 + -1.5 1,276,877 - +0.5 1,276,956 + -0.2 1,276,956 + +0.0 1,276,956 + +1.2 1,276,956 + -1.4 1,276,956 + +1.2 1,276,956 + -1.6 1,276,957 - -0.4 1,276,957 - -0.4 1,276,957 - -0.9 1,276,957 - +0.8 1,276,957 - +1.3 1,276,957 - -1.6 1,276,957 - -0.1 1,276,957 - -1.1 1,276,960 + -1.5 1,276,960 + -0.3 1,277,006 + -0.3 1,277,007 - -2.0 1,277,007 - -1.0 1,277,069 + -0.8 1,277,180 + -0.3 1,277,180 + -0.0 1,277,219 + -1.2 1,277,220 - +0.2 1,277,220 - -0.4 1,277,220 - -1.2 1,277,220 - +0.2 1,277,246 + -0.7 1,277,246 + -1.7 1,277,247 - -1.1 1,277,354 + Xcc-8004.1353.1 0.10 -1.9 1,277,354 + Xcc-8004.1353.1 0.10 -1.1 1,277,354 + Xcc-8004.1353.1 0.10 -0.5 1,277,354 + Xcc-8004.1353.1 0.10 +0.0 1,277,354 + Xcc-8004.1353.1 0.10 +0.3 1,277,354 + Xcc-8004.1353.1 0.10 +2.3 1,277,354 + Xcc-8004.1353.1 0.10 +0.2 1,277,355 - Xcc-8004.1353.1 0.10 -1.8 1,277,355 - Xcc-8004.1353.1 0.10 +1.0 1,277,355 - Xcc-8004.1353.1 0.10 -1.7 1,277,355 - Xcc-8004.1353.1 0.10 -1.3 1,277,355 - Xcc-8004.1353.1 0.10 -0.4 1,277,355 - Xcc-8004.1353.1 0.10 +0.6 1,277,355 - Xcc-8004.1353.1 0.10 -2.1 1,277,558 + Xcc-8004.1353.1 0.25 -0.3 1,277,558 + Xcc-8004.1353.1 0.25 -1.3 1,277,558 + Xcc-8004.1353.1 0.25 +0.0 1,277,558 + Xcc-8004.1353.1 0.25 +0.0 1,277,559 - Xcc-8004.1353.1 0.25 -1.1 1,277,559 - Xcc-8004.1353.1 0.25 -0.3 1,277,562 + Xcc-8004.1353.1 0.26 -1.8 1,277,562 + Xcc-8004.1353.1 0.26 -0.4 1,277,562 + Xcc-8004.1353.1 0.26 -0.3 1,277,562 + Xcc-8004.1353.1 0.26 +1.6 1,277,562 + Xcc-8004.1353.1 0.26 -1.6 1,277,562 + Xcc-8004.1353.1 0.26 -3.0 1,277,562 + Xcc-8004.1353.1 0.26 +1.6 1,277,562 + Xcc-8004.1353.1 0.26 -1.0 1,277,563 - Xcc-8004.1353.1 0.26 -1.2 1,277,563 - Xcc-8004.1353.1 0.26 -0.7 1,277,563 - Xcc-8004.1353.1 0.26 -1.4 1,277,563 - Xcc-8004.1353.1 0.26 -0.9 1,277,563 - Xcc-8004.1353.1 0.26 -1.0 1,277,715 - Xcc-8004.1353.1 0.37 +0.2 1,277,715 - Xcc-8004.1353.1 0.37 -1.8 1,277,717 + Xcc-8004.1353.1 0.37 -2.2 1,277,717 + Xcc-8004.1353.1 0.37 -0.5 1,277,717 + Xcc-8004.1353.1 0.37 +0.8 1,277,718 - Xcc-8004.1353.1 0.37 -1.6 1,277,718 - Xcc-8004.1353.1 0.37 +0.1 1,277,718 - Xcc-8004.1353.1 0.37 -0.4 1,277,973 + Xcc-8004.1353.1 0.56 +0.1 1,277,973 + Xcc-8004.1353.1 0.56 -0.5 1,277,974 - Xcc-8004.1353.1 0.56 -0.2 1,277,974 - Xcc-8004.1353.1 0.56 +1.5 1,277,974 - Xcc-8004.1353.1 0.56 -1.1 1,278,116 + Xcc-8004.1353.1 0.67 -2.2 1,278,116 + Xcc-8004.1353.1 0.67 -1.7 1,278,116 + Xcc-8004.1353.1 0.67 +0.1 1,278,116 + Xcc-8004.1353.1 0.67 -1.1 1,278,116 + Xcc-8004.1353.1 0.67 +0.3 1,278,116 + Xcc-8004.1353.1 0.67 -0.7 1,278,117 - Xcc-8004.1353.1 0.67 -0.6 1,278,117 - Xcc-8004.1353.1 0.67 -3.1 1,278,117 - Xcc-8004.1353.1 0.67 +1.0 1,278,117 - Xcc-8004.1353.1 0.67 -0.9 1,278,117 - Xcc-8004.1353.1 0.67 -1.6 1,278,392 + Xcc-8004.1353.1 0.88 -0.4 1,278,467 + -0.7 1,278,624 + -0.6 1,278,624 + +0.3 1,278,651 + -0.1 1,278,822 + -0.8 1,278,822 + +1.3 1,278,834 - -0.1 1,278,851 + -1.3 1,278,851 + -1.2 1,278,851 + -0.5 1,278,852 - -0.3 1,278,852 - +0.1 1,278,852 - -0.4 1,278,852 - +0.8 1,278,939 + +0.3 1,278,939 + -1.1 1,278,939 + -0.6 1,278,939 + -0.4 1,278,939 + -0.7 1,278,939 + -1.5 1,278,940 - +0.5 1,278,940 - +0.7 1,278,940 - -1.4 1,278,940 - -0.8 1,278,940 - -0.7 1,278,940 - +1.0 1,278,975 + -1.0 1,278,975 + -0.4 1,278,975 + +0.2 1,278,975 + +0.1 1,278,976 - +0.4 1,278,976 - -0.1 1,278,976 - -1.3 1,279,110 + Xcc-8004.1354.1 0.18 +1.0 1,279,110 + Xcc-8004.1354.1 0.18 -1.2 1,279,110 + Xcc-8004.1354.1 0.18 +1.0 1,279,111 - Xcc-8004.1354.1 0.18 +0.3 1,279,111 - Xcc-8004.1354.1 0.18 -1.5 1,279,111 - Xcc-8004.1354.1 0.18 -1.3 1,279,127 + Xcc-8004.1354.1 0.19 -0.2 1,279,127 + Xcc-8004.1354.1 0.19 +0.1 1,279,127 + Xcc-8004.1354.1 0.19 +0.8 1,279,127 + Xcc-8004.1354.1 0.19 -0.1 1,279,127 + Xcc-8004.1354.1 0.19 +0.2 1,279,128 - Xcc-8004.1354.1 0.19 -0.3 1,279,128 - Xcc-8004.1354.1 0.19 -1.3 1,279,128 - Xcc-8004.1354.1 0.19 -0.5 1,279,240 - Xcc-8004.1354.1 0.26 +0.3 1,279,428 + Xcc-8004.1354.1 0.38 -0.2 1,279,428 + Xcc-8004.1354.1 0.38 -0.7 1,279,428 + Xcc-8004.1354.1 0.38 -0.1 1,279,428 + Xcc-8004.1354.1 0.38 -2.2 1,279,428 + Xcc-8004.1354.1 0.38 -0.9 1,279,428 + Xcc-8004.1354.1 0.38 +0.3 1,279,428 + Xcc-8004.1354.1 0.38 +0.4 1,279,428 + Xcc-8004.1354.1 0.38 +0.1 1,279,428 + Xcc-8004.1354.1 0.38 -1.6 1,279,428 + Xcc-8004.1354.1 0.38 -0.3 1,279,428 + Xcc-8004.1354.1 0.38 -3.4 1,279,429 - Xcc-8004.1354.1 0.38 -1.5 1,279,429 - Xcc-8004.1354.1 0.38 -0.5 1,279,429 - Xcc-8004.1354.1 0.38 -0.9 1,279,429 - Xcc-8004.1354.1 0.38 -0.4 1,279,429 - Xcc-8004.1354.1 0.38 -0.9
Or see this region's nucleotide sequence