Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.124.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.122.1 and Xcc-8004.124.1 are separated by 513 nucleotidesXcc-8004.124.1 and Xcc-8004.123.1 overlap by 139 nucleotides Xcc-8004.122.1: Xcc-8004.122.1 - TldD family protein, Actinobacterial subgroup, at 111,541 to 113,217 Xcc-8004.122.1 Xcc-8004.124.1: Xcc-8004.124.1 - hypothetical protein, at 113,731 to 114,162 Xcc-8004.124.1 Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685 Xcc-8004.123.1 Position (kb) 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 112.977 kb on - strand, within Xcc-8004.122.1at 113.000 kb on + strand, within Xcc-8004.122.1at 113.000 kb on + strand, within Xcc-8004.122.1at 113.001 kb on - strand, within Xcc-8004.122.1at 113.001 kb on - strand, within Xcc-8004.122.1at 113.001 kb on - strand, within Xcc-8004.122.1at 113.112 kb on - strandat 113.112 kb on - strandat 113.112 kb on - strandat 113.112 kb on - strandat 113.112 kb on - strandat 113.112 kb on - strandat 113.190 kb on + strandat 113.191 kb on - strandat 113.444 kb on - strandat 113.444 kb on - strandat 113.499 kb on + strandat 113.499 kb on + strandat 113.499 kb on + strandat 113.502 kb on - strandat 113.502 kb on - strandat 113.502 kb on - strandat 113.516 kb on - strandat 113.516 kb on - strandat 113.516 kb on - strandat 113.588 kb on + strandat 113.589 kb on - strandat 113.589 kb on - strandat 113.589 kb on - strandat 113.589 kb on - strandat 113.599 kb on - strandat 113.606 kb on + strandat 113.606 kb on + strandat 113.607 kb on - strandat 113.627 kb on - strandat 113.627 kb on - strandat 113.627 kb on - strandat 113.627 kb on - strandat 113.751 kb on + strandat 113.751 kb on + strandat 113.751 kb on + strandat 113.850 kb on + strand, within Xcc-8004.124.1at 113.850 kb on + strand, within Xcc-8004.124.1at 113.850 kb on + strand, within Xcc-8004.124.1at 113.850 kb on + strand, within Xcc-8004.124.1at 113.851 kb on - strand, within Xcc-8004.124.1at 113.851 kb on - strand, within Xcc-8004.124.1at 113.860 kb on + strand, within Xcc-8004.124.1at 113.860 kb on + strand, within Xcc-8004.124.1at 113.860 kb on + strand, within Xcc-8004.124.1at 113.860 kb on + strand, within Xcc-8004.124.1at 113.861 kb on - strand, within Xcc-8004.124.1at 113.966 kb on + strand, within Xcc-8004.124.1at 113.966 kb on + strand, within Xcc-8004.124.1at 113.967 kb on - strand, within Xcc-8004.124.1at 113.967 kb on - strand, within Xcc-8004.124.1at 113.967 kb on - strand, within Xcc-8004.124.1at 113.988 kb on - strand, within Xcc-8004.124.1at 114.000 kb on + strand, within Xcc-8004.124.1at 114.000 kb on + strand, within Xcc-8004.124.1at 114.000 kb on + strand, within Xcc-8004.124.1at 114.000 kb on + strand, within Xcc-8004.124.1at 114.001 kb on - strand, within Xcc-8004.124.1at 114.051 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.052 kb on - strandat 114.260 kb on - strand, within Xcc-8004.123.1at 114.260 kb on - strand, within Xcc-8004.123.1at 114.289 kb on + strand, within Xcc-8004.123.1at 114.289 kb on + strand, within Xcc-8004.123.1at 114.289 kb on + strand, within Xcc-8004.123.1at 114.289 kb on + strand, within Xcc-8004.123.1at 114.289 kb on + strand, within Xcc-8004.123.1at 114.290 kb on - strand, within Xcc-8004.123.1at 114.290 kb on - strand, within Xcc-8004.123.1at 114.310 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.327 kb on + strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.328 kb on - strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.331 kb on + strand, within Xcc-8004.123.1at 114.332 kb on - strand, within Xcc-8004.123.1at 114.332 kb on - strand, within Xcc-8004.123.1at 114.332 kb on - strand, within Xcc-8004.123.1at 114.446 kb on - strand, within Xcc-8004.123.1at 114.446 kb on - strand, within Xcc-8004.123.1at 114.568 kb on + strand, within Xcc-8004.123.1at 114.569 kb on - strand, within Xcc-8004.123.1at 114.685 kb on + strand, within Xcc-8004.123.1at 114.685 kb on + strand, within Xcc-8004.123.1at 114.685 kb on + strand, within Xcc-8004.123.1at 114.686 kb on - strand, within Xcc-8004.123.1at 114.697 kb on + strand, within Xcc-8004.123.1at 114.697 kb on + strand, within Xcc-8004.123.1at 114.697 kb on + strand, within Xcc-8004.123.1at 114.698 kb on - strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.784 kb on + strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.785 kb on - strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.865 kb on + strand, within Xcc-8004.123.1at 114.866 kb on - strand, within Xcc-8004.123.1at 114.866 kb on - strand, within Xcc-8004.123.1at 114.866 kb on - strand, within Xcc-8004.123.1at 114.866 kb on - strand, within Xcc-8004.123.1at 114.931 kb on + strand, within Xcc-8004.123.1at 114.931 kb on + strand, within Xcc-8004.123.1at 114.932 kb on - strand, within Xcc-8004.123.1at 114.938 kb on - strand, within Xcc-8004.123.1at 114.938 kb on - strand, within Xcc-8004.123.1at 114.938 kb on - strand, within Xcc-8004.123.1at 114.938 kb on - strand, within Xcc-8004.123.1at 115.051 kb on + strand, within Xcc-8004.123.1at 115.051 kb on + strand, within Xcc-8004.123.1at 115.051 kb on + strand, within Xcc-8004.123.1at 115.051 kb on + strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.052 kb on - strand, within Xcc-8004.123.1at 115.075 kb on + strand, within Xcc-8004.123.1at 115.075 kb on + strand, within Xcc-8004.123.1at 115.076 kb on - strand, within Xcc-8004.123.1at 115.076 kb on - strand, within Xcc-8004.123.1at 115.076 kb on - strand, within Xcc-8004.123.1at 115.076 kb on - strand, within Xcc-8004.123.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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112,977 - Xcc-8004.122.1 0.86 +0.9
113,000 + Xcc-8004.122.1 0.87 +1.7
113,000 + Xcc-8004.122.1 0.87 -2.5
113,001 - Xcc-8004.122.1 0.87 -1.1
113,001 - Xcc-8004.122.1 0.87 +0.5
113,001 - Xcc-8004.122.1 0.87 +0.7
113,112 - -0.2
113,112 - -1.8
113,112 - +0.4
113,112 - +0.3
113,112 - -0.2
113,112 - +1.1
113,190 + -1.5
113,191 - -1.6
113,444 - +0.1
113,444 - -0.1
113,499 + -0.8
113,499 + +0.8
113,499 + -1.8
113,502 - -0.1
113,502 - -1.1
113,502 - -1.9
113,516 - +0.1
113,516 - -0.4
113,516 - -0.2
113,588 + +0.8
113,589 - -1.3
113,589 - -0.2
113,589 - -0.2
113,589 - +0.9
113,599 - +0.1
113,606 + +0.4
113,606 + +0.3
113,607 - -0.0
113,627 - +0.1
113,627 - -0.8
113,627 - +0.1
113,627 - -0.3
113,751 + -0.6
113,751 + -0.2
113,751 + +0.5
113,850 + Xcc-8004.124.1 0.28 -0.3
113,850 + Xcc-8004.124.1 0.28 +0.6
113,850 + Xcc-8004.124.1 0.28 -0.8
113,850 + Xcc-8004.124.1 0.28 -0.8
113,851 - Xcc-8004.124.1 0.28 -1.1
113,851 - Xcc-8004.124.1 0.28 +0.2
113,860 + Xcc-8004.124.1 0.30 +0.2
113,860 + Xcc-8004.124.1 0.30 -0.4
113,860 + Xcc-8004.124.1 0.30 +0.3
113,860 + Xcc-8004.124.1 0.30 -2.7
113,861 - Xcc-8004.124.1 0.30 +0.2
113,966 + Xcc-8004.124.1 0.54 +0.3
113,966 + Xcc-8004.124.1 0.54 +1.8
113,967 - Xcc-8004.124.1 0.55 -1.4
113,967 - Xcc-8004.124.1 0.55 -0.6
113,967 - Xcc-8004.124.1 0.55 +1.3
113,988 - Xcc-8004.124.1 0.59 +1.3
114,000 + Xcc-8004.124.1 0.62 +0.7
114,000 + Xcc-8004.124.1 0.62 +0.2
114,000 + Xcc-8004.124.1 0.62 +2.4
114,000 + Xcc-8004.124.1 0.62 +0.6
114,001 - Xcc-8004.124.1 0.62 -0.3
114,051 + +0.2
114,051 + -0.2
114,051 + +1.0
114,051 + -0.2
114,052 - +0.2
114,260 - Xcc-8004.123.1 0.14 +0.4
114,260 - Xcc-8004.123.1 0.14 +1.1
114,289 + Xcc-8004.123.1 0.16 -1.1
114,289 + Xcc-8004.123.1 0.16 -0.2
114,289 + Xcc-8004.123.1 0.16 +0.8
114,289 + Xcc-8004.123.1 0.16 +0.9
114,289 + Xcc-8004.123.1 0.16 +1.2
114,290 - Xcc-8004.123.1 0.16 -0.6
114,290 - Xcc-8004.123.1 0.16 -0.2
114,310 + Xcc-8004.123.1 0.17 -0.4
114,327 + Xcc-8004.123.1 0.18 +0.1
114,327 + Xcc-8004.123.1 0.18 -0.1
114,327 + Xcc-8004.123.1 0.18 -0.2
114,327 + Xcc-8004.123.1 0.18 -0.5
114,327 + Xcc-8004.123.1 0.18 -0.8
114,327 + Xcc-8004.123.1 0.18 +0.0
114,327 + Xcc-8004.123.1 0.18 +2.0
114,327 + Xcc-8004.123.1 0.18 -0.2
114,327 + Xcc-8004.123.1 0.18 -1.1
114,327 + Xcc-8004.123.1 0.18 +0.2
114,328 - Xcc-8004.123.1 0.18 -0.9
114,328 - Xcc-8004.123.1 0.18 +0.4
114,328 - Xcc-8004.123.1 0.18 +0.1
114,328 - Xcc-8004.123.1 0.18 -0.0
114,328 - Xcc-8004.123.1 0.18 -0.6
114,328 - Xcc-8004.123.1 0.18 +0.5
114,328 - Xcc-8004.123.1 0.18 -0.6
114,328 - Xcc-8004.123.1 0.18 +2.6
114,328 - Xcc-8004.123.1 0.18 +0.6
114,328 - Xcc-8004.123.1 0.18 +1.3
114,328 - Xcc-8004.123.1 0.18 +0.7
114,331 + Xcc-8004.123.1 0.18 -0.4
114,331 + Xcc-8004.123.1 0.18 -0.7
114,331 + Xcc-8004.123.1 0.18 +0.3
114,331 + Xcc-8004.123.1 0.18 +0.4
114,331 + Xcc-8004.123.1 0.18 -2.5
114,331 + Xcc-8004.123.1 0.18 -1.3
114,331 + Xcc-8004.123.1 0.18 -0.4
114,332 - Xcc-8004.123.1 0.19 -0.6
114,332 - Xcc-8004.123.1 0.19 -0.9
114,332 - Xcc-8004.123.1 0.19 +0.5
114,446 - Xcc-8004.123.1 0.25 -1.0
114,446 - Xcc-8004.123.1 0.25 -0.6
114,568 + Xcc-8004.123.1 0.33 -1.5
114,569 - Xcc-8004.123.1 0.33 -0.8
114,685 + Xcc-8004.123.1 0.40 -1.1
114,685 + Xcc-8004.123.1 0.40 -0.3
114,685 + Xcc-8004.123.1 0.40 +0.6
114,686 - Xcc-8004.123.1 0.40 +2.8
114,697 + Xcc-8004.123.1 0.40 +0.3
114,697 + Xcc-8004.123.1 0.40 +0.9
114,697 + Xcc-8004.123.1 0.40 -0.3
114,698 - Xcc-8004.123.1 0.41 -1.0
114,784 + Xcc-8004.123.1 0.46 +1.0
114,784 + Xcc-8004.123.1 0.46 +0.4
114,784 + Xcc-8004.123.1 0.46 -2.0
114,784 + Xcc-8004.123.1 0.46 +1.2
114,784 + Xcc-8004.123.1 0.46 -1.8
114,784 + Xcc-8004.123.1 0.46 -0.4
114,785 - Xcc-8004.123.1 0.46 -0.4
114,785 - Xcc-8004.123.1 0.46 -0.2
114,785 - Xcc-8004.123.1 0.46 +0.4
114,785 - Xcc-8004.123.1 0.46 +0.6
114,785 - Xcc-8004.123.1 0.46 +0.1
114,785 - Xcc-8004.123.1 0.46 -2.9
114,785 - Xcc-8004.123.1 0.46 +0.8
114,865 + Xcc-8004.123.1 0.51 +0.0
114,865 + Xcc-8004.123.1 0.51 +0.3
114,865 + Xcc-8004.123.1 0.51 -0.6
114,865 + Xcc-8004.123.1 0.51 -1.7
114,865 + Xcc-8004.123.1 0.51 -0.2
114,865 + Xcc-8004.123.1 0.51 -0.5
114,865 + Xcc-8004.123.1 0.51 -0.6
114,865 + Xcc-8004.123.1 0.51 -0.0
114,866 - Xcc-8004.123.1 0.51 -0.2
114,866 - Xcc-8004.123.1 0.51 -1.1
114,866 - Xcc-8004.123.1 0.51 -0.2
114,866 - Xcc-8004.123.1 0.51 -0.6
114,931 + Xcc-8004.123.1 0.55 +0.3
114,931 + Xcc-8004.123.1 0.55 +0.4
114,932 - Xcc-8004.123.1 0.55 -0.3
114,938 - Xcc-8004.123.1 0.55 +0.2
114,938 - Xcc-8004.123.1 0.55 +0.5
114,938 - Xcc-8004.123.1 0.55 -0.1
114,938 - Xcc-8004.123.1 0.55 +1.0
115,051 + Xcc-8004.123.1 0.62 +0.2
115,051 + Xcc-8004.123.1 0.62 +0.1
115,051 + Xcc-8004.123.1 0.62 -0.7
115,051 + Xcc-8004.123.1 0.62 +0.1
115,052 - Xcc-8004.123.1 0.62 +1.2
115,052 - Xcc-8004.123.1 0.62 +0.7
115,052 - Xcc-8004.123.1 0.62 +0.1
115,052 - Xcc-8004.123.1 0.62 -0.6
115,052 - Xcc-8004.123.1 0.62 -1.8
115,052 - Xcc-8004.123.1 0.62 -0.2
115,052 - Xcc-8004.123.1 0.62 +0.9
115,075 + Xcc-8004.123.1 0.63 +0.9
115,075 + Xcc-8004.123.1 0.63 +0.2
115,076 - Xcc-8004.123.1 0.63 +0.3
115,076 - Xcc-8004.123.1 0.63 +0.3
115,076 - Xcc-8004.123.1 0.63 +0.9
115,076 - Xcc-8004.123.1 0.63 +0.1

Or see this region's nucleotide sequence