Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.121.1 and Xcc-8004.122.1 are separated by 14 nucleotides Xcc-8004.122.1 and Xcc-8004.124.1 are separated by 513 nucleotides Xcc-8004.124.1 and Xcc-8004.123.1 overlap by 139 nucleotides
Xcc-8004.121.1: Xcc-8004.121.1 - TldE/PmbA family protein, Actinobacterial subgroup, at 110,192 to 111,526
Xcc-8004.121.1
Xcc-8004.122.1: Xcc-8004.122.1 - TldD family protein, Actinobacterial subgroup, at 111,541 to 113,217
Xcc-8004.122.1
Xcc-8004.124.1: Xcc-8004.124.1 - hypothetical protein, at 113,731 to 114,162
Xcc-8004.124.1
Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685
Xcc-8004.123.1
Position (kb) 111
112
113
114 Strain fitness (log2 ratio) -2
-1
0
1
2 at 110.586 kb on + strand, within Xcc-8004.121.1 at 110.587 kb on - strand, within Xcc-8004.121.1 at 110.716 kb on - strand, within Xcc-8004.121.1 at 110.716 kb on - strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.853 kb on + strand, within Xcc-8004.121.1 at 110.854 kb on - strand, within Xcc-8004.121.1 at 110.854 kb on - strand, within Xcc-8004.121.1 at 110.911 kb on + strand, within Xcc-8004.121.1 at 110.911 kb on + strand, within Xcc-8004.121.1 at 110.912 kb on - strand, within Xcc-8004.121.1 at 111.033 kb on + strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.208 kb on - strand, within Xcc-8004.121.1 at 111.282 kb on - strand, within Xcc-8004.121.1 at 111.401 kb on - strand at 111.514 kb on + strand at 111.529 kb on - strand at 111.728 kb on + strand, within Xcc-8004.122.1 at 111.728 kb on + strand, within Xcc-8004.122.1 at 111.729 kb on - strand, within Xcc-8004.122.1 at 111.729 kb on - strand, within Xcc-8004.122.1 at 111.807 kb on - strand, within Xcc-8004.122.1 at 111.807 kb on - strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.848 kb on + strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.849 kb on - strand, within Xcc-8004.122.1 at 111.962 kb on + strand, within Xcc-8004.122.1 at 111.962 kb on + strand, within Xcc-8004.122.1 at 111.963 kb on - strand, within Xcc-8004.122.1 at 111.996 kb on + strand, within Xcc-8004.122.1 at 111.997 kb on - strand, within Xcc-8004.122.1 at 111.997 kb on - strand, within Xcc-8004.122.1 at 112.022 kb on + strand, within Xcc-8004.122.1 at 112.022 kb on + strand, within Xcc-8004.122.1 at 112.086 kb on - strand, within Xcc-8004.122.1 at 112.131 kb on + strand, within Xcc-8004.122.1 at 112.131 kb on + strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.132 kb on - strand, within Xcc-8004.122.1 at 112.301 kb on + strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.302 kb on - strand, within Xcc-8004.122.1 at 112.382 kb on + strand, within Xcc-8004.122.1 at 112.383 kb on - strand, within Xcc-8004.122.1 at 112.383 kb on - strand, within Xcc-8004.122.1 at 112.394 kb on + strand, within Xcc-8004.122.1 at 112.395 kb on - strand, within Xcc-8004.122.1 at 112.448 kb on + strand, within Xcc-8004.122.1 at 112.448 kb on + strand, within Xcc-8004.122.1 at 112.449 kb on - strand, within Xcc-8004.122.1 at 112.454 kb on + strand, within Xcc-8004.122.1 at 112.568 kb on + strand, within Xcc-8004.122.1 at 112.568 kb on + strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.569 kb on - strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.592 kb on + strand, within Xcc-8004.122.1 at 112.593 kb on - strand, within Xcc-8004.122.1 at 112.977 kb on - strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.190 kb on + strand at 113.191 kb on - strand at 113.444 kb on - strand at 113.444 kb on - strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.588 kb on + strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.599 kb on - strand at 113.606 kb on + strand at 113.606 kb on + strand at 113.607 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.861 kb on - strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.988 kb on - strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.001 kb on - strand, within Xcc-8004.124.1 at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 110,586 + Xcc-8004.121.1 0.30 +1.3 110,587 - Xcc-8004.121.1 0.30 +0.9 110,716 - Xcc-8004.121.1 0.39 -0.1 110,716 - Xcc-8004.121.1 0.39 +0.7 110,853 + Xcc-8004.121.1 0.50 -0.1 110,853 + Xcc-8004.121.1 0.50 +0.2 110,853 + Xcc-8004.121.1 0.50 -0.1 110,853 + Xcc-8004.121.1 0.50 +0.3 110,854 - Xcc-8004.121.1 0.50 -0.6 110,854 - Xcc-8004.121.1 0.50 +0.2 110,911 + Xcc-8004.121.1 0.54 -1.0 110,911 + Xcc-8004.121.1 0.54 +0.4 110,912 - Xcc-8004.121.1 0.54 -2.5 111,033 + Xcc-8004.121.1 0.63 +0.3 111,208 - Xcc-8004.121.1 0.76 +1.5 111,208 - Xcc-8004.121.1 0.76 +0.4 111,208 - Xcc-8004.121.1 0.76 -1.4 111,282 - Xcc-8004.121.1 0.82 +0.1 111,401 - -0.3 111,514 + -0.6 111,529 - -1.5 111,728 + Xcc-8004.122.1 0.11 +1.3 111,728 + Xcc-8004.122.1 0.11 +0.2 111,729 - Xcc-8004.122.1 0.11 +1.1 111,729 - Xcc-8004.122.1 0.11 -0.4 111,807 - Xcc-8004.122.1 0.16 +1.5 111,807 - Xcc-8004.122.1 0.16 +2.1 111,848 + Xcc-8004.122.1 0.18 -0.1 111,848 + Xcc-8004.122.1 0.18 -0.2 111,848 + Xcc-8004.122.1 0.18 +0.2 111,848 + Xcc-8004.122.1 0.18 -0.1 111,848 + Xcc-8004.122.1 0.18 -1.0 111,848 + Xcc-8004.122.1 0.18 -1.3 111,849 - Xcc-8004.122.1 0.18 -1.2 111,849 - Xcc-8004.122.1 0.18 -1.8 111,849 - Xcc-8004.122.1 0.18 +0.1 111,849 - Xcc-8004.122.1 0.18 +0.0 111,849 - Xcc-8004.122.1 0.18 -0.3 111,849 - Xcc-8004.122.1 0.18 -0.7 111,849 - Xcc-8004.122.1 0.18 -0.2 111,849 - Xcc-8004.122.1 0.18 +0.6 111,962 + Xcc-8004.122.1 0.25 -0.4 111,962 + Xcc-8004.122.1 0.25 +1.8 111,963 - Xcc-8004.122.1 0.25 -0.1 111,996 + Xcc-8004.122.1 0.27 +0.2 111,997 - Xcc-8004.122.1 0.27 +0.6 111,997 - Xcc-8004.122.1 0.27 -0.6 112,022 + Xcc-8004.122.1 0.29 +0.1 112,022 + Xcc-8004.122.1 0.29 +0.7 112,086 - Xcc-8004.122.1 0.32 -1.3 112,131 + Xcc-8004.122.1 0.35 -0.7 112,131 + Xcc-8004.122.1 0.35 +0.3 112,132 - Xcc-8004.122.1 0.35 -0.9 112,132 - Xcc-8004.122.1 0.35 +0.4 112,132 - Xcc-8004.122.1 0.35 -0.3 112,301 + Xcc-8004.122.1 0.45 -2.0 112,302 - Xcc-8004.122.1 0.45 +0.7 112,302 - Xcc-8004.122.1 0.45 +0.6 112,302 - Xcc-8004.122.1 0.45 +0.6 112,302 - Xcc-8004.122.1 0.45 -0.8 112,302 - Xcc-8004.122.1 0.45 +0.6 112,382 + Xcc-8004.122.1 0.50 -0.9 112,383 - Xcc-8004.122.1 0.50 -0.7 112,383 - Xcc-8004.122.1 0.50 +0.4 112,394 + Xcc-8004.122.1 0.51 -0.1 112,395 - Xcc-8004.122.1 0.51 +1.1 112,448 + Xcc-8004.122.1 0.54 -0.4 112,448 + Xcc-8004.122.1 0.54 -0.9 112,449 - Xcc-8004.122.1 0.54 +2.1 112,454 + Xcc-8004.122.1 0.54 +0.1 112,568 + Xcc-8004.122.1 0.61 -0.1 112,568 + Xcc-8004.122.1 0.61 +0.2 112,569 - Xcc-8004.122.1 0.61 +0.6 112,569 - Xcc-8004.122.1 0.61 +0.4 112,569 - Xcc-8004.122.1 0.61 -1.8 112,569 - Xcc-8004.122.1 0.61 -0.2 112,569 - Xcc-8004.122.1 0.61 -2.1 112,592 + Xcc-8004.122.1 0.63 +1.1 112,592 + Xcc-8004.122.1 0.63 +0.3 112,592 + Xcc-8004.122.1 0.63 +0.3 112,592 + Xcc-8004.122.1 0.63 -0.3 112,592 + Xcc-8004.122.1 0.63 +1.4 112,592 + Xcc-8004.122.1 0.63 +0.0 112,592 + Xcc-8004.122.1 0.63 +0.0 112,593 - Xcc-8004.122.1 0.63 +0.9 112,977 - Xcc-8004.122.1 0.86 +0.9 113,000 + Xcc-8004.122.1 0.87 +1.7 113,000 + Xcc-8004.122.1 0.87 -2.5 113,001 - Xcc-8004.122.1 0.87 -1.1 113,001 - Xcc-8004.122.1 0.87 +0.5 113,001 - Xcc-8004.122.1 0.87 +0.7 113,112 - -0.2 113,112 - -1.8 113,112 - +0.4 113,112 - +0.3 113,112 - -0.2 113,112 - +1.1 113,190 + -1.5 113,191 - -1.6 113,444 - +0.1 113,444 - -0.1 113,499 + -0.8 113,499 + +0.8 113,499 + -1.8 113,502 - -0.1 113,502 - -1.1 113,502 - -1.9 113,516 - +0.1 113,516 - -0.4 113,516 - -0.2 113,588 + +0.8 113,589 - -1.3 113,589 - -0.2 113,589 - -0.2 113,589 - +0.9 113,599 - +0.1 113,606 + +0.4 113,606 + +0.3 113,607 - -0.0 113,627 - +0.1 113,627 - -0.8 113,627 - +0.1 113,627 - -0.3 113,751 + -0.6 113,751 + -0.2 113,751 + +0.5 113,850 + Xcc-8004.124.1 0.28 -0.3 113,850 + Xcc-8004.124.1 0.28 +0.6 113,850 + Xcc-8004.124.1 0.28 -0.8 113,850 + Xcc-8004.124.1 0.28 -0.8 113,851 - Xcc-8004.124.1 0.28 -1.1 113,851 - Xcc-8004.124.1 0.28 +0.2 113,860 + Xcc-8004.124.1 0.30 +0.2 113,860 + Xcc-8004.124.1 0.30 -0.4 113,860 + Xcc-8004.124.1 0.30 +0.3 113,860 + Xcc-8004.124.1 0.30 -2.7 113,861 - Xcc-8004.124.1 0.30 +0.2 113,966 + Xcc-8004.124.1 0.54 +0.3 113,966 + Xcc-8004.124.1 0.54 +1.8 113,967 - Xcc-8004.124.1 0.55 -1.4 113,967 - Xcc-8004.124.1 0.55 -0.6 113,967 - Xcc-8004.124.1 0.55 +1.3 113,988 - Xcc-8004.124.1 0.59 +1.3 114,000 + Xcc-8004.124.1 0.62 +0.7 114,000 + Xcc-8004.124.1 0.62 +0.2 114,000 + Xcc-8004.124.1 0.62 +2.4 114,000 + Xcc-8004.124.1 0.62 +0.6 114,001 - Xcc-8004.124.1 0.62 -0.3 114,051 + +0.2 114,051 + -0.2 114,051 + +1.0 114,051 + -0.2 114,052 - +0.2
Or see this region's nucleotide sequence