Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.121.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.120.1 and Xcc-8004.121.1 are separated by 20 nucleotidesXcc-8004.121.1 and Xcc-8004.122.1 are separated by 14 nucleotides Xcc-8004.120.1: Xcc-8004.120.1 - FIG033680: Hypothetical protein, at 109,374 to 110,171 Xcc-8004.120.1 Xcc-8004.121.1: Xcc-8004.121.1 - TldE/PmbA family protein, Actinobacterial subgroup, at 110,192 to 111,526 Xcc-8004.121.1 Xcc-8004.122.1: Xcc-8004.122.1 - TldD family protein, Actinobacterial subgroup, at 111,541 to 113,217 Xcc-8004.122.1 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 109.261 kb on + strandat 109.269 kb on + strandat 109.269 kb on + strandat 109.269 kb on + strandat 109.269 kb on + strandat 109.270 kb on - strandat 109.270 kb on - strandat 109.270 kb on - strandat 109.270 kb on - strandat 109.270 kb on - strandat 109.270 kb on - strandat 109.312 kb on + strandat 109.313 kb on - strandat 109.313 kb on - strandat 109.344 kb on + strandat 109.390 kb on + strandat 109.390 kb on + strandat 109.390 kb on + strandat 109.390 kb on + strandat 109.391 kb on - strandat 109.391 kb on - strandat 109.391 kb on - strandat 109.391 kb on - strandat 109.391 kb on - strandat 109.489 kb on + strand, within Xcc-8004.120.1at 109.490 kb on - strand, within Xcc-8004.120.1at 109.490 kb on - strand, within Xcc-8004.120.1at 109.615 kb on + strand, within Xcc-8004.120.1at 109.616 kb on - strand, within Xcc-8004.120.1at 109.616 kb on - strand, within Xcc-8004.120.1at 109.710 kb on - strand, within Xcc-8004.120.1at 109.756 kb on + strand, within Xcc-8004.120.1at 109.756 kb on + strand, within Xcc-8004.120.1at 109.756 kb on + strand, within Xcc-8004.120.1at 109.756 kb on + strand, within Xcc-8004.120.1at 109.757 kb on - strand, within Xcc-8004.120.1at 109.895 kb on - strand, within Xcc-8004.120.1at 109.987 kb on + strand, within Xcc-8004.120.1at 109.987 kb on + strand, within Xcc-8004.120.1at 109.988 kb on - strand, within Xcc-8004.120.1at 110.123 kb on + strandat 110.259 kb on + strandat 110.260 kb on - strandat 110.260 kb on - strandat 110.260 kb on - strandat 110.361 kb on + strand, within Xcc-8004.121.1at 110.385 kb on + strand, within Xcc-8004.121.1at 110.385 kb on + strand, within Xcc-8004.121.1at 110.385 kb on + strand, within Xcc-8004.121.1at 110.386 kb on - strand, within Xcc-8004.121.1at 110.448 kb on + strand, within Xcc-8004.121.1at 110.448 kb on + strand, within Xcc-8004.121.1at 110.448 kb on + strand, within Xcc-8004.121.1at 110.449 kb on - strand, within Xcc-8004.121.1at 110.586 kb on + strand, within Xcc-8004.121.1at 110.587 kb on - strand, within Xcc-8004.121.1at 110.716 kb on - strand, within Xcc-8004.121.1at 110.716 kb on - strand, within Xcc-8004.121.1at 110.853 kb on + strand, within Xcc-8004.121.1at 110.853 kb on + strand, within Xcc-8004.121.1at 110.853 kb on + strand, within Xcc-8004.121.1at 110.853 kb on + strand, within Xcc-8004.121.1at 110.854 kb on - strand, within Xcc-8004.121.1at 110.854 kb on - strand, within Xcc-8004.121.1at 110.911 kb on + strand, within Xcc-8004.121.1at 110.911 kb on + strand, within Xcc-8004.121.1at 110.912 kb on - strand, within Xcc-8004.121.1at 111.033 kb on + strand, within Xcc-8004.121.1at 111.208 kb on - strand, within Xcc-8004.121.1at 111.208 kb on - strand, within Xcc-8004.121.1at 111.208 kb on - strand, within Xcc-8004.121.1at 111.282 kb on - strand, within Xcc-8004.121.1at 111.401 kb on - strandat 111.514 kb on + strandat 111.529 kb on - strandat 111.728 kb on + strand, within Xcc-8004.122.1at 111.728 kb on + strand, within Xcc-8004.122.1at 111.729 kb on - strand, within Xcc-8004.122.1at 111.729 kb on - strand, within Xcc-8004.122.1at 111.807 kb on - strand, within Xcc-8004.122.1at 111.807 kb on - strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.848 kb on + strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.849 kb on - strand, within Xcc-8004.122.1at 111.962 kb on + strand, within Xcc-8004.122.1at 111.962 kb on + strand, within Xcc-8004.122.1at 111.963 kb on - strand, within Xcc-8004.122.1at 111.996 kb on + strand, within Xcc-8004.122.1at 111.997 kb on - strand, within Xcc-8004.122.1at 111.997 kb on - strand, within Xcc-8004.122.1at 112.022 kb on + strand, within Xcc-8004.122.1at 112.022 kb on + strand, within Xcc-8004.122.1at 112.086 kb on - strand, within Xcc-8004.122.1at 112.131 kb on + strand, within Xcc-8004.122.1at 112.131 kb on + strand, within Xcc-8004.122.1at 112.132 kb on - strand, within Xcc-8004.122.1at 112.132 kb on - strand, within Xcc-8004.122.1at 112.132 kb on - strand, within Xcc-8004.122.1at 112.301 kb on + strand, within Xcc-8004.122.1at 112.302 kb on - strand, within Xcc-8004.122.1at 112.302 kb on - strand, within Xcc-8004.122.1at 112.302 kb on - strand, within Xcc-8004.122.1at 112.302 kb on - strand, within Xcc-8004.122.1at 112.302 kb on - strand, within Xcc-8004.122.1at 112.382 kb on + strand, within Xcc-8004.122.1at 112.383 kb on - strand, within Xcc-8004.122.1at 112.383 kb on - strand, within Xcc-8004.122.1at 112.394 kb on + strand, within Xcc-8004.122.1at 112.395 kb on - strand, within Xcc-8004.122.1at 112.448 kb on + strand, within Xcc-8004.122.1at 112.448 kb on + strand, within Xcc-8004.122.1at 112.449 kb on - strand, within Xcc-8004.122.1at 112.454 kb on + strand, within Xcc-8004.122.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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109,261 + -2.1
109,269 + -0.9
109,269 + -0.4
109,269 + -1.1
109,269 + -1.0
109,270 - -0.0
109,270 - -1.6
109,270 - +1.0
109,270 - +0.0
109,270 - +0.3
109,270 - -0.4
109,312 + -0.7
109,313 - +0.8
109,313 - +0.1
109,344 + -1.1
109,390 + +0.4
109,390 + +0.8
109,390 + -0.6
109,390 + -2.6
109,391 - -1.2
109,391 - -0.0
109,391 - -1.7
109,391 - +0.5
109,391 - -0.0
109,489 + Xcc-8004.120.1 0.14 +1.7
109,490 - Xcc-8004.120.1 0.15 +0.3
109,490 - Xcc-8004.120.1 0.15 -0.4
109,615 + Xcc-8004.120.1 0.30 +0.1
109,616 - Xcc-8004.120.1 0.30 -0.0
109,616 - Xcc-8004.120.1 0.30 -1.0
109,710 - Xcc-8004.120.1 0.42 -0.4
109,756 + Xcc-8004.120.1 0.48 +0.6
109,756 + Xcc-8004.120.1 0.48 -1.7
109,756 + Xcc-8004.120.1 0.48 -0.2
109,756 + Xcc-8004.120.1 0.48 +0.5
109,757 - Xcc-8004.120.1 0.48 +0.5
109,895 - Xcc-8004.120.1 0.65 +0.1
109,987 + Xcc-8004.120.1 0.77 +0.1
109,987 + Xcc-8004.120.1 0.77 -2.5
109,988 - Xcc-8004.120.1 0.77 -0.5
110,123 + -0.2
110,259 + +2.0
110,260 - -0.5
110,260 - -0.5
110,260 - -0.3
110,361 + Xcc-8004.121.1 0.13 +0.2
110,385 + Xcc-8004.121.1 0.14 -1.5
110,385 + Xcc-8004.121.1 0.14 +0.0
110,385 + Xcc-8004.121.1 0.14 -1.3
110,386 - Xcc-8004.121.1 0.15 -0.8
110,448 + Xcc-8004.121.1 0.19 +0.5
110,448 + Xcc-8004.121.1 0.19 +1.0
110,448 + Xcc-8004.121.1 0.19 +1.3
110,449 - Xcc-8004.121.1 0.19 +0.2
110,586 + Xcc-8004.121.1 0.30 +1.3
110,587 - Xcc-8004.121.1 0.30 +0.9
110,716 - Xcc-8004.121.1 0.39 -0.1
110,716 - Xcc-8004.121.1 0.39 +0.7
110,853 + Xcc-8004.121.1 0.50 -0.1
110,853 + Xcc-8004.121.1 0.50 +0.2
110,853 + Xcc-8004.121.1 0.50 -0.1
110,853 + Xcc-8004.121.1 0.50 +0.3
110,854 - Xcc-8004.121.1 0.50 -0.6
110,854 - Xcc-8004.121.1 0.50 +0.2
110,911 + Xcc-8004.121.1 0.54 -1.0
110,911 + Xcc-8004.121.1 0.54 +0.4
110,912 - Xcc-8004.121.1 0.54 -2.5
111,033 + Xcc-8004.121.1 0.63 +0.3
111,208 - Xcc-8004.121.1 0.76 +1.5
111,208 - Xcc-8004.121.1 0.76 +0.4
111,208 - Xcc-8004.121.1 0.76 -1.4
111,282 - Xcc-8004.121.1 0.82 +0.1
111,401 - -0.3
111,514 + -0.6
111,529 - -1.5
111,728 + Xcc-8004.122.1 0.11 +1.3
111,728 + Xcc-8004.122.1 0.11 +0.2
111,729 - Xcc-8004.122.1 0.11 +1.1
111,729 - Xcc-8004.122.1 0.11 -0.4
111,807 - Xcc-8004.122.1 0.16 +1.5
111,807 - Xcc-8004.122.1 0.16 +2.1
111,848 + Xcc-8004.122.1 0.18 -0.1
111,848 + Xcc-8004.122.1 0.18 -0.2
111,848 + Xcc-8004.122.1 0.18 +0.2
111,848 + Xcc-8004.122.1 0.18 -0.1
111,848 + Xcc-8004.122.1 0.18 -1.0
111,848 + Xcc-8004.122.1 0.18 -1.3
111,849 - Xcc-8004.122.1 0.18 -1.2
111,849 - Xcc-8004.122.1 0.18 -1.8
111,849 - Xcc-8004.122.1 0.18 +0.1
111,849 - Xcc-8004.122.1 0.18 +0.0
111,849 - Xcc-8004.122.1 0.18 -0.3
111,849 - Xcc-8004.122.1 0.18 -0.7
111,849 - Xcc-8004.122.1 0.18 -0.2
111,849 - Xcc-8004.122.1 0.18 +0.6
111,962 + Xcc-8004.122.1 0.25 -0.4
111,962 + Xcc-8004.122.1 0.25 +1.8
111,963 - Xcc-8004.122.1 0.25 -0.1
111,996 + Xcc-8004.122.1 0.27 +0.2
111,997 - Xcc-8004.122.1 0.27 +0.6
111,997 - Xcc-8004.122.1 0.27 -0.6
112,022 + Xcc-8004.122.1 0.29 +0.1
112,022 + Xcc-8004.122.1 0.29 +0.7
112,086 - Xcc-8004.122.1 0.32 -1.3
112,131 + Xcc-8004.122.1 0.35 -0.7
112,131 + Xcc-8004.122.1 0.35 +0.3
112,132 - Xcc-8004.122.1 0.35 -0.9
112,132 - Xcc-8004.122.1 0.35 +0.4
112,132 - Xcc-8004.122.1 0.35 -0.3
112,301 + Xcc-8004.122.1 0.45 -2.0
112,302 - Xcc-8004.122.1 0.45 +0.7
112,302 - Xcc-8004.122.1 0.45 +0.6
112,302 - Xcc-8004.122.1 0.45 +0.6
112,302 - Xcc-8004.122.1 0.45 -0.8
112,302 - Xcc-8004.122.1 0.45 +0.6
112,382 + Xcc-8004.122.1 0.50 -0.9
112,383 - Xcc-8004.122.1 0.50 -0.7
112,383 - Xcc-8004.122.1 0.50 +0.4
112,394 + Xcc-8004.122.1 0.51 -0.1
112,395 - Xcc-8004.122.1 0.51 +1.1
112,448 + Xcc-8004.122.1 0.54 -0.4
112,448 + Xcc-8004.122.1 0.54 -0.9
112,449 - Xcc-8004.122.1 0.54 +2.1
112,454 + Xcc-8004.122.1 0.54 +0.1

Or see this region's nucleotide sequence