Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06342 and H281DRAFT_06343 are separated by 53 nucleotides H281DRAFT_06343 and H281DRAFT_06344 are separated by 6 nucleotides H281DRAFT_06344 and H281DRAFT_06345 are separated by 135 nucleotides
H281DRAFT_06342: H281DRAFT_06342 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 16,383 to 17,804
_06342
H281DRAFT_06343: H281DRAFT_06343 - transcriptional regulator, AsnC family, at 17,858 to 18,355
_06343
H281DRAFT_06344: H281DRAFT_06344 - transcriptional regulator, LysR family, at 18,362 to 19,285
_06344
H281DRAFT_06345: H281DRAFT_06345 - tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase, at 19,421 to 20,503
_06345
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 17.529 kb on - strand, within H281DRAFT_06342 at 17.803 kb on - strand at 17.803 kb on - strand at 17.846 kb on + strand at 17.847 kb on - strand at 18.012 kb on - strand, within H281DRAFT_06343 at 18.185 kb on + strand, within H281DRAFT_06343 at 18.282 kb on - strand, within H281DRAFT_06343 at 18.354 kb on - strand at 18.776 kb on + strand, within H281DRAFT_06344 at 18.776 kb on + strand, within H281DRAFT_06344 at 18.839 kb on - strand, within H281DRAFT_06344 at 18.986 kb on - strand at 18.986 kb on - strand, within H281DRAFT_06344 at 19.072 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.177 kb on - strand, within H281DRAFT_06344 at 19.372 kb on + strand at 19.373 kb on - strand at 19.373 kb on - strand at 19.396 kb on - strand at 19.568 kb on + strand, within H281DRAFT_06345 at 19.727 kb on + strand, within H281DRAFT_06345 at 19.888 kb on - strand, within H281DRAFT_06345
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 17,529 - H281DRAFT_06342 0.81 -0.4 17,803 - -0.6 17,803 - -0.4 17,846 + +0.8 17,847 - -1.9 18,012 - H281DRAFT_06343 0.31 -0.9 18,185 + H281DRAFT_06343 0.66 -0.7 18,282 - H281DRAFT_06343 0.85 +0.2 18,354 - +1.6 18,776 + H281DRAFT_06344 0.45 +0.2 18,776 + H281DRAFT_06344 0.45 +1.5 18,839 - H281DRAFT_06344 0.52 -1.5 18,986 - -1.3 18,986 - H281DRAFT_06344 0.68 +0.7 19,072 + H281DRAFT_06344 0.77 -0.5 19,176 + H281DRAFT_06344 0.88 +0.5 19,176 + H281DRAFT_06344 0.88 +1.3 19,177 - H281DRAFT_06344 0.88 +0.5 19,372 + +0.5 19,373 - +0.5 19,373 - +0.3 19,396 - +0.1 19,568 + H281DRAFT_06345 0.14 +0.3 19,727 + H281DRAFT_06345 0.28 +0.1 19,888 - H281DRAFT_06345 0.43 +0.0
Or see this region's nucleotide sequence