Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06193 and H281DRAFT_06194 are separated by 80 nucleotides H281DRAFT_06194 and H281DRAFT_06195 are separated by 276 nucleotides H281DRAFT_06195 and H281DRAFT_06196 are separated by 33 nucleotides H281DRAFT_06196 and H281DRAFT_06197 are separated by 64 nucleotides H281DRAFT_06197 and H281DRAFT_06198 are separated by 241 nucleotides
H281DRAFT_06193: H281DRAFT_06193 - hypothetical protein, at 82,248 to 83,075
_06193
H281DRAFT_06194: H281DRAFT_06194 - Proteolipid membrane potential modulator, at 83,156 to 83,350
_06194
H281DRAFT_06195: H281DRAFT_06195 - hypothetical protein, at 83,627 to 83,890
_06195
H281DRAFT_06196: H281DRAFT_06196 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 83,924 to 85,891
_06196
H281DRAFT_06197: H281DRAFT_06197 - hypothetical protein, at 85,956 to 86,174
_06197
H281DRAFT_06198: H281DRAFT_06198 - hypothetical protein, at 86,416 to 86,931
_06198
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -1
0
1
2 at 83.097 kb on + strand at 83.097 kb on + strand at 83.097 kb on + strand at 83.108 kb on + strand at 83.108 kb on + strand at 83.108 kb on + strand at 83.202 kb on + strand, within H281DRAFT_06194 at 83.211 kb on - strand, within H281DRAFT_06194 at 83.253 kb on - strand, within H281DRAFT_06194 at 83.342 kb on + strand at 83.343 kb on - strand at 83.354 kb on + strand at 83.377 kb on - strand at 83.407 kb on - strand at 83.409 kb on + strand at 83.409 kb on + strand at 83.409 kb on + strand at 83.523 kb on - strand at 83.523 kb on - strand at 83.591 kb on + strand at 83.592 kb on - strand at 83.598 kb on + strand at 83.804 kb on + strand, within H281DRAFT_06195 at 83.804 kb on + strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.805 kb on - strand, within H281DRAFT_06195 at 83.806 kb on + strand, within H281DRAFT_06195 at 83.807 kb on - strand, within H281DRAFT_06195 at 83.807 kb on - strand, within H281DRAFT_06195 at 83.860 kb on - strand, within H281DRAFT_06195 at 84.059 kb on + strand at 84.098 kb on - strand at 84.098 kb on - strand at 84.321 kb on + strand, within H281DRAFT_06196 at 84.322 kb on - strand, within H281DRAFT_06196 at 84.557 kb on + strand, within H281DRAFT_06196 at 84.557 kb on + strand, within H281DRAFT_06196 at 84.558 kb on - strand, within H281DRAFT_06196 at 84.678 kb on + strand, within H281DRAFT_06196 at 84.679 kb on - strand, within H281DRAFT_06196 at 84.686 kb on + strand, within H281DRAFT_06196 at 84.686 kb on + strand, within H281DRAFT_06196 at 84.686 kb on + strand, within H281DRAFT_06196 at 84.758 kb on + strand, within H281DRAFT_06196 at 84.759 kb on - strand, within H281DRAFT_06196 at 84.792 kb on - strand at 84.792 kb on - strand, within H281DRAFT_06196 at 84.892 kb on + strand, within H281DRAFT_06196 at 84.893 kb on - strand, within H281DRAFT_06196 at 84.893 kb on - strand, within H281DRAFT_06196 at 85.085 kb on + strand, within H281DRAFT_06196 at 85.085 kb on + strand, within H281DRAFT_06196 at 85.085 kb on + strand, within H281DRAFT_06196 at 85.085 kb on + strand, within H281DRAFT_06196 at 85.086 kb on - strand, within H281DRAFT_06196 at 85.088 kb on + strand, within H281DRAFT_06196 at 85.088 kb on + strand, within H281DRAFT_06196 at 85.089 kb on - strand, within H281DRAFT_06196 at 85.126 kb on + strand, within H281DRAFT_06196 at 85.126 kb on + strand, within H281DRAFT_06196 at 85.127 kb on - strand, within H281DRAFT_06196 at 85.127 kb on - strand, within H281DRAFT_06196 at 85.239 kb on + strand, within H281DRAFT_06196 at 85.239 kb on + strand, within H281DRAFT_06196 at 85.261 kb on - strand, within H281DRAFT_06196 at 85.273 kb on + strand, within H281DRAFT_06196 at 85.574 kb on - strand, within H281DRAFT_06196 at 85.574 kb on - strand, within H281DRAFT_06196 at 85.650 kb on - strand, within H281DRAFT_06196 at 85.657 kb on + strand, within H281DRAFT_06196 at 85.783 kb on + strand at 85.832 kb on + strand at 85.887 kb on + strand at 85.887 kb on + strand at 85.887 kb on + strand at 85.888 kb on - strand at 86.152 kb on + strand, within H281DRAFT_06197 at 86.152 kb on + strand, within H281DRAFT_06197 at 86.163 kb on - strand at 86.168 kb on - strand at 86.214 kb on + strand at 86.215 kb on - strand at 86.215 kb on - strand at 86.305 kb on + strand at 86.305 kb on + strand at 86.305 kb on + strand at 86.305 kb on + strand at 86.305 kb on + strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.306 kb on - strand at 86.330 kb on + strand at 86.331 kb on - strand at 86.358 kb on + strand at 86.362 kb on + strand at 86.362 kb on + strand at 86.362 kb on + strand at 86.363 kb on - strand at 86.363 kb on - strand at 86.363 kb on - strand at 86.366 kb on - strand at 86.499 kb on + strand, within H281DRAFT_06198 at 86.500 kb on - strand, within H281DRAFT_06198 at 86.610 kb on + strand, within H281DRAFT_06198 at 86.611 kb on - strand, within H281DRAFT_06198 at 86.613 kb on + strand, within H281DRAFT_06198 at 86.613 kb on + strand, within H281DRAFT_06198 at 86.613 kb on + strand, within H281DRAFT_06198 at 86.614 kb on - strand, within H281DRAFT_06198 at 86.614 kb on - strand, within H281DRAFT_06198 at 86.670 kb on - strand, within H281DRAFT_06198 at 86.803 kb on + strand, within H281DRAFT_06198
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 83,097 + +0.0 83,097 + +0.2 83,097 + +1.0 83,108 + +1.1 83,108 + +0.1 83,108 + -0.3 83,202 + H281DRAFT_06194 0.24 +0.4 83,211 - H281DRAFT_06194 0.28 +0.6 83,253 - H281DRAFT_06194 0.50 +0.8 83,342 + -0.4 83,343 - +0.6 83,354 + -0.3 83,377 - +0.9 83,407 - +0.1 83,409 + +0.5 83,409 + +0.2 83,409 + +0.4 83,523 - -0.1 83,523 - +0.1 83,591 + +0.4 83,592 - +0.2 83,598 + -0.0 83,804 + H281DRAFT_06195 0.67 -0.8 83,804 + H281DRAFT_06195 0.67 +0.6 83,805 - H281DRAFT_06195 0.67 -0.5 83,805 - H281DRAFT_06195 0.67 -0.9 83,805 - H281DRAFT_06195 0.67 -0.2 83,806 + H281DRAFT_06195 0.68 -0.8 83,807 - H281DRAFT_06195 0.68 +0.3 83,807 - H281DRAFT_06195 0.68 -0.2 83,860 - H281DRAFT_06195 0.88 +0.7 84,059 + -1.0 84,098 - +0.1 84,098 - -0.8 84,321 + H281DRAFT_06196 0.20 +0.1 84,322 - H281DRAFT_06196 0.20 -0.8 84,557 + H281DRAFT_06196 0.32 -0.2 84,557 + H281DRAFT_06196 0.32 +0.2 84,558 - H281DRAFT_06196 0.32 +0.5 84,678 + H281DRAFT_06196 0.38 +0.3 84,679 - H281DRAFT_06196 0.38 -0.1 84,686 + H281DRAFT_06196 0.39 +0.0 84,686 + H281DRAFT_06196 0.39 +0.2 84,686 + H281DRAFT_06196 0.39 -0.0 84,758 + H281DRAFT_06196 0.42 -0.5 84,759 - H281DRAFT_06196 0.42 -0.4 84,792 - +1.8 84,792 - H281DRAFT_06196 0.44 +0.6 84,892 + H281DRAFT_06196 0.49 +0.8 84,893 - H281DRAFT_06196 0.49 +0.2 84,893 - H281DRAFT_06196 0.49 -1.0 85,085 + H281DRAFT_06196 0.59 +0.1 85,085 + H281DRAFT_06196 0.59 +0.2 85,085 + H281DRAFT_06196 0.59 +1.1 85,085 + H281DRAFT_06196 0.59 +0.8 85,086 - H281DRAFT_06196 0.59 +0.6 85,088 + H281DRAFT_06196 0.59 -0.5 85,088 + H281DRAFT_06196 0.59 +0.6 85,089 - H281DRAFT_06196 0.59 +0.2 85,126 + H281DRAFT_06196 0.61 -0.3 85,126 + H281DRAFT_06196 0.61 +1.1 85,127 - H281DRAFT_06196 0.61 -0.0 85,127 - H281DRAFT_06196 0.61 -0.6 85,239 + H281DRAFT_06196 0.67 +0.8 85,239 + H281DRAFT_06196 0.67 -1.0 85,261 - H281DRAFT_06196 0.68 -0.3 85,273 + H281DRAFT_06196 0.69 -0.1 85,574 - H281DRAFT_06196 0.84 +0.3 85,574 - H281DRAFT_06196 0.84 -1.5 85,650 - H281DRAFT_06196 0.88 +0.2 85,657 + H281DRAFT_06196 0.88 +0.9 85,783 + +0.1 85,832 + +0.6 85,887 + +2.3 85,887 + -0.5 85,887 + -1.0 85,888 - -0.3 86,152 + H281DRAFT_06197 0.89 +0.1 86,152 + H281DRAFT_06197 0.89 -0.6 86,163 - +1.0 86,168 - +0.3 86,214 + -0.6 86,215 - -0.1 86,215 - -0.4 86,305 + +1.1 86,305 + +0.3 86,305 + -1.1 86,305 + -0.3 86,305 + -1.0 86,306 - -0.3 86,306 - -0.4 86,306 - +0.3 86,306 - -0.3 86,306 - +0.3 86,306 - +0.3 86,306 - +0.1 86,306 - +0.5 86,306 - +0.1 86,306 - +0.1 86,306 - +0.6 86,330 + +0.4 86,331 - +0.4 86,358 + -1.4 86,362 + +0.0 86,362 + +0.0 86,362 + -0.4 86,363 - -0.3 86,363 - +0.3 86,363 - +0.1 86,366 - -0.0 86,499 + H281DRAFT_06198 0.16 -0.0 86,500 - H281DRAFT_06198 0.16 +0.5 86,610 + H281DRAFT_06198 0.38 -0.2 86,611 - H281DRAFT_06198 0.38 +0.4 86,613 + H281DRAFT_06198 0.38 +1.0 86,613 + H281DRAFT_06198 0.38 +0.6 86,613 + H281DRAFT_06198 0.38 -0.4 86,614 - H281DRAFT_06198 0.38 +0.1 86,614 - H281DRAFT_06198 0.38 +0.2 86,670 - H281DRAFT_06198 0.49 -0.3 86,803 + H281DRAFT_06198 0.75 -1.0
Or see this region's nucleotide sequence