Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06054 and H281DRAFT_06055 are separated by 73 nucleotides H281DRAFT_06055 and H281DRAFT_06056 are separated by 93 nucleotides
H281DRAFT_06054: H281DRAFT_06054 - maltooligosyl trehalose synthase, at 66,164 to 69,019
_06054
H281DRAFT_06055: H281DRAFT_06055 - Hemolysin, contains CBS domains, at 69,093 to 70,436
_06055
H281DRAFT_06056: H281DRAFT_06056 - histidine kinase (EC 2.7.13.3), at 70,530 to 71,465
_06056
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.128 kb on + strand, within H281DRAFT_06054 at 68.128 kb on + strand, within H281DRAFT_06054 at 68.129 kb on - strand, within H281DRAFT_06054 at 68.133 kb on - strand, within H281DRAFT_06054 at 68.133 kb on - strand, within H281DRAFT_06054 at 68.171 kb on + strand, within H281DRAFT_06054 at 68.321 kb on + strand, within H281DRAFT_06054 at 68.322 kb on - strand, within H281DRAFT_06054 at 68.322 kb on - strand, within H281DRAFT_06054 at 68.322 kb on - strand, within H281DRAFT_06054 at 68.615 kb on - strand, within H281DRAFT_06054 at 68.615 kb on - strand, within H281DRAFT_06054 at 68.696 kb on + strand, within H281DRAFT_06054 at 68.951 kb on + strand at 69.095 kb on - strand at 69.210 kb on - strand at 69.210 kb on - strand at 69.529 kb on + strand, within H281DRAFT_06055 at 69.529 kb on + strand, within H281DRAFT_06055 at 69.530 kb on - strand, within H281DRAFT_06055 at 69.569 kb on + strand, within H281DRAFT_06055 at 69.814 kb on + strand, within H281DRAFT_06055 at 69.896 kb on - strand, within H281DRAFT_06055 at 69.983 kb on - strand, within H281DRAFT_06055 at 69.994 kb on + strand, within H281DRAFT_06055 at 70.235 kb on + strand, within H281DRAFT_06055 at 70.262 kb on - strand, within H281DRAFT_06055 at 70.262 kb on - strand, within H281DRAFT_06055 at 70.262 kb on - strand, within H281DRAFT_06055 at 70.470 kb on + strand at 70.471 kb on - strand at 70.471 kb on - strand at 70.471 kb on - strand at 70.653 kb on + strand, within H281DRAFT_06056 at 70.654 kb on - strand, within H281DRAFT_06056 at 70.671 kb on - strand at 70.671 kb on - strand, within H281DRAFT_06056 at 70.811 kb on + strand, within H281DRAFT_06056 at 70.811 kb on + strand, within H281DRAFT_06056 at 70.963 kb on - strand, within H281DRAFT_06056 at 70.963 kb on - strand, within H281DRAFT_06056 at 71.158 kb on + strand, within H281DRAFT_06056 at 71.159 kb on - strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.168 kb on + strand, within H281DRAFT_06056 at 71.169 kb on - strand, within H281DRAFT_06056 at 71.169 kb on - strand, within H281DRAFT_06056 at 71.206 kb on - strand, within H281DRAFT_06056 at 71.377 kb on - strand at 71.378 kb on + strand at 71.378 kb on + strand at 71.378 kb on + strand at 71.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 68,128 + H281DRAFT_06054 0.69 -0.0 68,128 + H281DRAFT_06054 0.69 -0.6 68,129 - H281DRAFT_06054 0.69 -0.0 68,133 - H281DRAFT_06054 0.69 +0.7 68,133 - H281DRAFT_06054 0.69 +0.5 68,171 + H281DRAFT_06054 0.70 +0.5 68,321 + H281DRAFT_06054 0.76 +0.2 68,322 - H281DRAFT_06054 0.76 -2.2 68,322 - H281DRAFT_06054 0.76 +0.2 68,322 - H281DRAFT_06054 0.76 +0.5 68,615 - H281DRAFT_06054 0.86 +0.7 68,615 - H281DRAFT_06054 0.86 -0.7 68,696 + H281DRAFT_06054 0.89 +0.2 68,951 + -0.2 69,095 - -0.2 69,210 - +0.6 69,210 - -0.7 69,529 + H281DRAFT_06055 0.32 -0.1 69,529 + H281DRAFT_06055 0.32 -0.7 69,530 - H281DRAFT_06055 0.33 -0.1 69,569 + H281DRAFT_06055 0.35 -3.0 69,814 + H281DRAFT_06055 0.54 +0.2 69,896 - H281DRAFT_06055 0.60 -1.2 69,983 - H281DRAFT_06055 0.66 +0.3 69,994 + H281DRAFT_06055 0.67 -1.3 70,235 + H281DRAFT_06055 0.85 -0.7 70,262 - H281DRAFT_06055 0.87 -1.0 70,262 - H281DRAFT_06055 0.87 -1.3 70,262 - H281DRAFT_06055 0.87 +0.9 70,470 + +1.2 70,471 - -1.1 70,471 - -0.4 70,471 - -0.7 70,653 + H281DRAFT_06056 0.13 +1.4 70,654 - H281DRAFT_06056 0.13 +1.5 70,671 - +1.7 70,671 - H281DRAFT_06056 0.15 +1.9 70,811 + H281DRAFT_06056 0.30 +1.6 70,811 + H281DRAFT_06056 0.30 +1.3 70,963 - H281DRAFT_06056 0.46 +1.4 70,963 - H281DRAFT_06056 0.46 +1.7 71,158 + H281DRAFT_06056 0.67 +1.1 71,159 - H281DRAFT_06056 0.67 +1.6 71,168 + H281DRAFT_06056 0.68 +2.2 71,168 + H281DRAFT_06056 0.68 +0.7 71,168 + H281DRAFT_06056 0.68 +1.3 71,168 + H281DRAFT_06056 0.68 +1.2 71,168 + H281DRAFT_06056 0.68 +1.2 71,168 + H281DRAFT_06056 0.68 +1.0 71,169 - H281DRAFT_06056 0.68 +0.3 71,169 - H281DRAFT_06056 0.68 +1.3 71,206 - H281DRAFT_06056 0.72 +2.2 71,377 - -0.5 71,378 + -0.0 71,378 + -0.2 71,378 + -0.0 71,379 - +0.9
Or see this region's nucleotide sequence