Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05925 and H281DRAFT_05926 are separated by 309 nucleotides H281DRAFT_05926 and H281DRAFT_05927 are separated by 88 nucleotides H281DRAFT_05927 and H281DRAFT_05928 are separated by 410 nucleotides H281DRAFT_05928 and H281DRAFT_05929 are separated by 25 nucleotides
H281DRAFT_05925: H281DRAFT_05925 - diguanylate cyclase (GGDEF) domain-containing protein, at 60,584 to 62,158
_05925
H281DRAFT_05926: H281DRAFT_05926 - hypothetical protein, at 62,468 to 62,752
_05926
H281DRAFT_05927: H281DRAFT_05927 - Glycogen debranching enzyme (alpha-1,6-glucosidase), at 62,841 to 65,123
_05927
H281DRAFT_05928: H281DRAFT_05928 - hypothetical protein, at 65,534 to 65,935
_05928
H281DRAFT_05929: H281DRAFT_05929 - Pimeloyl-ACP methyl ester carboxylesterase, at 65,961 to 66,749
_05929
Position (kb) 62
63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.052 kb on - strand at 62.052 kb on - strand at 62.211 kb on + strand at 62.211 kb on + strand at 62.212 kb on - strand at 62.212 kb on - strand at 62.212 kb on - strand at 62.342 kb on + strand at 62.353 kb on - strand at 62.353 kb on - strand at 63.287 kb on - strand, within H281DRAFT_05927 at 63.551 kb on - strand, within H281DRAFT_05927 at 64.082 kb on + strand, within H281DRAFT_05927 at 64.083 kb on - strand, within H281DRAFT_05927 at 64.132 kb on + strand, within H281DRAFT_05927 at 64.337 kb on + strand, within H281DRAFT_05927 at 64.337 kb on + strand, within H281DRAFT_05927 at 64.337 kb on + strand, within H281DRAFT_05927 at 64.429 kb on + strand, within H281DRAFT_05927 at 64.468 kb on + strand, within H281DRAFT_05927 at 64.552 kb on + strand, within H281DRAFT_05927 at 65.137 kb on - strand at 65.204 kb on - strand at 65.411 kb on + strand at 65.727 kb on + strand, within H281DRAFT_05928 at 65.784 kb on - strand, within H281DRAFT_05928 at 65.934 kb on - strand at 65.934 kb on - strand at 65.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 62,052 - -0.4 62,052 - -1.6 62,211 + -0.4 62,211 + +0.4 62,212 - -0.9 62,212 - +0.4 62,212 - -0.0 62,342 + +0.6 62,353 - +0.5 62,353 - +0.1 63,287 - H281DRAFT_05927 0.20 -0.2 63,551 - H281DRAFT_05927 0.31 -0.9 64,082 + H281DRAFT_05927 0.54 -0.6 64,083 - H281DRAFT_05927 0.54 +0.6 64,132 + H281DRAFT_05927 0.57 +0.3 64,337 + H281DRAFT_05927 0.66 -1.2 64,337 + H281DRAFT_05927 0.66 -2.9 64,337 + H281DRAFT_05927 0.66 +0.2 64,429 + H281DRAFT_05927 0.70 -0.8 64,468 + H281DRAFT_05927 0.71 +0.3 64,552 + H281DRAFT_05927 0.75 -1.7 65,137 - -0.3 65,204 - -0.0 65,411 + +1.5 65,727 + H281DRAFT_05928 0.48 +0.1 65,784 - H281DRAFT_05928 0.62 -0.3 65,934 - -0.7 65,934 - -0.5 65,999 - +1.3
Or see this region's nucleotide sequence